View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_high_13 (Length: 312)
Name: NF3478_high_13
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 11570508 - 11570202
Alignment:
| Q |
1 |
catctcttcttttcctgcgatgtcatcctccctatgtggtatgagatagctagctggttggggtgggatcttgtgtcacactctttaatcttaggtcatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||| |
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| T |
11570508 |
catctcttcttttcctgcgatgtcatcctccctatgttgtatgagatagctaggtggttggggtggcctcttgtgccacactcgttaatcttaggtcatt |
11570409 |
T |
|
| Q |
101 |
ttgaggcggctattgggttggggtctagtaagaaagtaggtctaggttttttgctagtctggcttgttgttgtgtgggatgtttggaactcatgtaatga |
200 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| |||||||| |
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| T |
11570408 |
ttgagacggctactgggttggggtctagtaagaaagtaggtctaggttttttgctagtctggcttgctgttgtgtggactgtcgggaactcctgtaatga |
11570309 |
T |
|
| Q |
201 |
tattatctttgctggagggactccgactatcgattttcttgtggatcgggtcaagttctcctcttgaaagtggttcattttgaagagctcagtttgtctc |
300 |
Q |
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||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |
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| T |
11570308 |
tattatctttgatggagggactccgaccgtcgatttgcttgtggatagggtcaagttctcctcttggaagtggttcattgtgaagagctcagtttgcctc |
11570209 |
T |
|
| Q |
301 |
tgctcct |
307 |
Q |
| |
|
||||||| |
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|
| T |
11570208 |
tgctcct |
11570202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 305
Target Start/End: Complemental strand, 17375175 - 17374910
Alignment:
| Q |
24 |
catcctccctatgtggtatgagatagctagctggttggggtgggatcttgtgtcacactctttaatcttaggtcattttgaggcggctattgggttgggg |
123 |
Q |
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|||||||||| | | ||| || |||||||| ||||||| |||||||| |||| ||||||| | || |||||||||||||||| | || |||||||||| |
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| T |
17375175 |
catcctccctttttagtacgacatagctaggtggttggagtgggatcatgtgccacactcatctattttaggtcattttgaggggtttactgggttgggg |
17375076 |
T |
|
| Q |
124 |
tctagtaagaaagtaggtctaggttttttgctagtctggcttgttgttgtgtgggatgtttggaactcatgtaatgatattatctttgctggagggactc |
223 |
Q |
| |
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| T |
17375075 |
tctagtaagaaagtaggtgttggtcttttgctagtctgacttgctgttatgtggactgtctggaactc-----ccgatattatctttgctggaggg---- |
17374985 |
T |
|
| Q |
224 |
cgactatcgattttcttgtggatcgggtcaagttctcctcttgaaagtggttcattttgaagagctcagtttgtctctgctc |
305 |
Q |
| |
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||| || |||||||||| ||||||||||||||||| || ||||||||| ||||||||| ||| | |||||||| |
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| T |
17374984 |
-------cgagttgattgtggatcgtgtcaagttctcctcttggaaatggttcattgcgaagagctcggttagcctctgctc |
17374910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 31223243 - 31223364
Alignment:
| Q |
155 |
tagtctggcttgttgttgtgtgggatgtttggaactcatgtaatgatattatctttgctggagggactccgactatcgattttcttgtggatcgggtcaa |
254 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||| | |||||| | ||||||||| |||||||||| || |||| || |||| |||| ||| || |
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| T |
31223243 |
tagtttggcttgctgttgtgtggtctgtttggaactcccgcaatgatttgatctttgctcgagggactccttctgtcgagttgattgttgatcaggtgaa |
31223342 |
T |
|
| Q |
255 |
gttctcctcttgaaagtggttc |
276 |
Q |
| |
|
|||| |||||||||| |||||| |
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| T |
31223343 |
gttcgcctcttgaaaatggttc |
31223364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 27876361 - 27876240
Alignment:
| Q |
112 |
attgggttggggtctagtaagaaagtaggtctaggttttttgctagtctggcttgttgttgtgtgggatgtttggaactcatgtaatgatattatctttg |
211 |
Q |
| |
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|||| ||||||||| ||||||| ||| ||||||||||| |||||||| |||||||||| ||||||| ||| |||||||| | || ||| ||||||||| |
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| T |
27876361 |
attgagttggggtcaagtaagagagttggtctaggtttgttgctagtttggcttgttgctgtgtggactgtctggaactcccgcaaagatgttatctttg |
27876262 |
T |
|
| Q |
212 |
ctggagggactccgactatcga |
233 |
Q |
| |
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||| ||||||||||||| |||| |
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| T |
27876261 |
ctgaagggactccgactgtcga |
27876240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 24707492 - 24707573
Alignment:
| Q |
196 |
aatgatattatctttgctggagggactccgactatcgattttcttgtggatcgggtcaagttctcctcttgaaagtggttca |
277 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||| || | ||||||||||| ||||||||||||||||| ||||||| |
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| T |
24707492 |
aatgatcttatctttgctagagggacttagactatcgagttgatagtggatcgggtgaagttctcctcttgaaaatggttca |
24707573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 275
Target Start/End: Original strand, 19915762 - 19915873
Alignment:
| Q |
164 |
ttgttgttgtgtgggatgtttggaactcatgtaatgatattatctttgctggagggactccgactatcgattttcttgtggatcgggtcaagttctcctc |
263 |
Q |
| |
|
|||||||||||||| |||| ||||| || | | |||| | |||||||||||||||| || ||| |||| || ||||||||||||| |||||| |||| |
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| T |
19915762 |
ttgttgttgtgtggtatgtctggaattcccgcattgatttgatctttgctggagggattcttactgtcgagttgattgtggatcgggtgaagttcgcctc |
19915861 |
T |
|
| Q |
264 |
ttgaaagtggtt |
275 |
Q |
| |
|
||| || ||||| |
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|
| T |
19915862 |
ttggaaatggtt |
19915873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 33730180 - 33730125
Alignment:
| Q |
163 |
cttgttgttgtgtgggatgtttggaactcatgtaatgatattatctttgctggagg |
218 |
Q |
| |
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||||||||||||| |||||||||||||| ||||||||||| || ||||| ||||| |
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| T |
33730180 |
cttgttgttgtgtatgatgtttggaactcttgtaatgatatcatttttgcgggagg |
33730125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 16520266 - 16520207
Alignment:
| Q |
160 |
tggcttgttgttgtgtgggatgtttggaactcatgtaatgatattatctttgctggaggg |
219 |
Q |
| |
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||||||| ||||||||||| |||||||||||| |||||||||| || ||||| |||||| |
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|
| T |
16520266 |
tggcttgctgttgtgtgggctgtttggaactctcgtaatgatataatttttgcgggaggg |
16520207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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