View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3478_high_15 (Length: 294)
Name: NF3478_high_15
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 188 - 286
Target Start/End: Original strand, 40606669 - 40606767
Alignment:
| Q |
188 |
catagtaaccattgttatgtttcgttaagtgcacttgttgcagtagaaggcactgtgtaatgtggctgatatttttatgtttccttagatcaatccttt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
40606669 |
catagtaaccattgttatgtttcgttaagtgcacttgttgcagtagaaggcactgtgtaatgtggctggtatttttatgtttcctcatatcaatccttt |
40606767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 10623554 - 10623510
Alignment:
| Q |
18 |
acaaaaaatctcccaacaaggacaacaacaactaccaattactgt |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10623554 |
acaaaaaatctcccaacaaggacaacaacaactaccaattactgt |
10623510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University