View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_high_16 (Length: 281)
Name: NF3478_high_16
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 45397539 - 45397784
Alignment:
| Q |
13 |
aatatatatgacgtgaatgattgatgcttagcttaagcaatggaataattggatgttatatagtggctacatgttggcttcatggagattggagatattc |
112 |
Q |
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| T |
45397539 |
aatatatatgacgtgaatgattgatgcttagcttaagcaatggaataattggatgttatatagtggctacatgttggcttcatggagattggagatattc |
45397638 |
T |
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| Q |
113 |
ataaaccatcacacgaaatagataaggatatatagcatgggctaaatattaaagaataatttatttatttgtatttgtatttgtatttgcatgctagcat |
212 |
Q |
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| T |
45397639 |
ataaaccatcacacgaaatagataaggatatatagcatgggctaaatattaaagaataatttatttatt------tgtatttgtatttgcatgctagcac |
45397732 |
T |
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| Q |
213 |
gatttaatgattaaagtctaaagtgtatattgcgttacgtatatatgatcac |
264 |
Q |
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| T |
45397733 |
gatttaatgattaaagtctaaagtgtatattgcgttacgtatatatgatcac |
45397784 |
T |
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