View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3478_high_19 (Length: 259)
Name: NF3478_high_19
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 48653942 - 48653710
Alignment:
| Q |
17 |
atgaactatagaaataaagttgtttgttactcatgagtatgtatatgttggtaagacttaatatatgaactcaaaagatgaaaggtagactctcctttta |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48653942 |
atgaactatagaaataaagttgtttgttactcatgagtatgtatgtgttggtaggacttaatatatgaattcaaaagatgaaaggtagactctcctttta |
48653843 |
T |
|
| Q |
117 |
tgtgggtatatgcgttggattgatgaacataaatgtgagatcgttattgaactgaaataataaggagagaaatgagccttctatgaaagatttcttttgt |
216 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| | |
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| T |
48653842 |
tgttggtatatgcgttggattgatgaacataaatgtgagatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttat |
48653743 |
T |
|
| Q |
217 |
catgtataagatgttgtgttattactttctgtg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
48653742 |
catgtataagatgttgtgttattactttctgtg |
48653710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 48576816 - 48577021
Alignment:
| Q |
17 |
atgaactatagaaataaagttgtttgttactcatgagtatgtatatgtt-ggtaagacttaatatatgaactcaaaagatgaaaggtagactctcctttt |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48576816 |
atgaactataagaataaagttgtttgttactcatgggtatgtatgtgtttggtaagacttaatatatgaactcaaaagatgaaaggtagactctcctttt |
48576915 |
T |
|
| Q |
116 |
atgtgggtatatgcgttggattgatgaacataaatgtgagatcgttattgaactgaaataataaggagagaaatgagccttctatgaaagatttcttttg |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
48576916 |
atgtgggtatatgttttggattgatgaacataaatgtgagatcgttatcgaactaaaataata---agagaaatgagccttttatgaaagatttcttttg |
48577012 |
T |
|
| Q |
216 |
tcatgtata |
224 |
Q |
| |
|
||||||||| |
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|
| T |
48577013 |
tcatgtata |
48577021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 13773528 - 13773296
Alignment:
| Q |
17 |
atgaactatagaaataaagttgtttgttactcatgagtatgtatatgttggtaagacttaatatatgaactcaaaagatgaaaggtagactctcctttta |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13773528 |
atgaactataaaaataaagttgtttgttactcatgagtatgtatgtgttggtaagacttaatatatgaactcaaaagatgaaaggtagactctcctttta |
13773429 |
T |
|
| Q |
117 |
tgtgggtatatgcgttggattgatgaacataaatgtgagatcgttattgaactgaaataataaggagagaaatgagccttctatgaaagatttcttttgt |
216 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
13773428 |
tgtgggtatatgggttggattgatgaatataaatgtcagatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgt |
13773329 |
T |
|
| Q |
217 |
catgtataagatgttgtgttattactttctgtg |
249 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| |
|
|
| T |
13773328 |
catgtataggatgttgagttattactttctgtg |
13773296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 35670893 - 35670665
Alignment:
| Q |
17 |
atgaactatagaaataaagttgtttgttactcatgagtatgtatatgttggtaagacttaatatatgaactcaaaagatgaaaggtagactctcctttta |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35670893 |
atgaactataagaataaagttgtttgttactcatgagtatgtatgtgttggtaagacttaatatatgaactcaaaagatgaaaggtagactctcctttta |
35670794 |
T |
|
| Q |
117 |
tgtgggtatatgcgttggattgatgaacataaatgtgagatcgttattgaactgaaataataaggagagaaatgagccttctatgaaagatttcttttgt |
216 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
35670793 |
tgtggatatatgtgttggattgatgaacataaatgtgagatcgttat----ctgaaataataagcagataaatgagccttttatgaaagatttcttttgt |
35670698 |
T |
|
| Q |
217 |
catgtataagatgttgtgttattactttctgtg |
249 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
35670697 |
catgtataagatgtcgtgttattactttctgtg |
35670665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 28267255 - 28267026
Alignment:
| Q |
17 |
atgaactatagaaataaagttgtttgttactcatgagtatgtatatgtt-ggtaagacttaatatatgaactcaaaagatgaaaggtagactctcctttt |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267255 |
atgaactataagaataaagttgtttgttactcatgagtatgtacgtgtttggtaagactta---tatgaactcaaaagatgaaaggtagactctcctttt |
28267159 |
T |
|
| Q |
116 |
atgtgggtatatgcgttggattgatgaacataaatgtgagatcgttattgaactgaaataataaggagagaaatgagccttctatgaaagatttcttttg |
215 |
Q |
| |
|
| | || ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| || |||||||||| | |||||||||||||||||| |
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|
| T |
28267158 |
acatagg-atatgttttggattgatgaacataaatgtgagatcgttatcgaactaaaataataagaagggaaatgagccctttatgaaagatttcttttg |
28267060 |
T |
|
| Q |
216 |
tcatgtataagatgttgtgttattactttctgtg |
249 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| |
|
|
| T |
28267059 |
tcatgtacatgatgttgtgttattactttctgtg |
28267026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 49 - 249
Target Start/End: Complemental strand, 12774511 - 12774306
Alignment:
| Q |
49 |
atgagtatgtatatgttggtaagacttaatatatgaactcaaaagatgaaaggtagactctccttttatgtgggtatatgcgttggattgatgaacataa |
148 |
Q |
| |
|
||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
12774511 |
atgagtatggatgttttggtaagacttaatatatgaactcaaaagatgaaaggtagactctccttttatgtgggtatatgttttggattgatgaacataa |
12774412 |
T |
|
| Q |
149 |
atgtgagatcgttattgaactgaaataataaggagag-----aaatgagccttctatgaaagatttcttttgtcatgtataagatgttgtgttattactt |
243 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
12774411 |
atgtgagatcgttatcgaactaaaataataataagagaaattaaatgagccttttatgaaagatttcttttgtcatgtacatgatgttgtattattactt |
12774312 |
T |
|
| Q |
244 |
tctgtg |
249 |
Q |
| |
|
|||||| |
|
|
| T |
12774311 |
tctgtg |
12774306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 41340240 - 41340170
Alignment:
| Q |
147 |
aaatgtgagatcgttattgaactgaaataataaggagagaaatgagccttctatgaaagatttcttttgtc |
217 |
Q |
| |
|
|||| |||||| ||||| |||| |||||||||| |||||||| ||| || |||||||||||| ||||||| |
|
|
| T |
41340240 |
aaatttgagattgttatcgaacagaaataataataagagaaataagctttttatgaaagattttttttgtc |
41340170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 42861537 - 42861704
Alignment:
| Q |
78 |
tatatgaactcaaaagatgaaaggtagactctccttttatgtgggtatatgcgttggattgatgaacataaatgtgagatcgttattgaactgaaataat |
177 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42861537 |
tatataaactcaaaagatgaaaggtagactctccttctatgtgagtatatgcgttggattgatgaacataaatgtgagatcgttatcgaactgaaataat |
42861636 |
T |
|
| Q |
178 |
aaggagagaaatgagccttctatgaaagatttcttttgtcatgtataagatgttgtgttattactttc |
245 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42861637 |
aagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttc |
42861704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 18472932 - 18472802
Alignment:
| Q |
118 |
gtgggtatatgcgttggattgatgaacataaatgtgagatcgttattgaactgaaataataaggagagaaatgagccttctatgaaagatttcttttgtc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18472932 |
gtgggtatatgcgttggattgatgaacataaatgtcagatcgttatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtc |
18472833 |
T |
|
| Q |
218 |
atgtataagatgttgtgttattactttctgt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
18472832 |
atgtataagatgttgtgttattactttctgt |
18472802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 33007726 - 33007642
Alignment:
| Q |
36 |
ttgtttgttactcatgagtatgtatatgttggtaagacttaatatatgaactcaaaagatgaaaggtagactctccttttatgtg |
120 |
Q |
| |
|
|||||| |||||||||| ||||||| ||| ||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
33007726 |
ttgtttattactcatgaatatgtatgtgtgggtaagacttaatatattaactcaaaagatgaaaggcagattctccttttatgtg |
33007642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 18473645 - 18473603
Alignment:
| Q |
81 |
atgaactcaaaagatgaaaggtagactctccttttatgtgggt |
123 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18473645 |
atgaactcaaaagatgaaagggagactctccttttatgtgggt |
18473603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 25921693 - 25921755
Alignment:
| Q |
159 |
gttattgaactgaaataataaggagagaaatgagccttctatgaaagatttcttttgtcatgt |
221 |
Q |
| |
|
||||| |||||||||||||||| ||| ||| || ||| ||||| |||||||||||||||||| |
|
|
| T |
25921693 |
gttatggaactgaaataataagaagaacaataagacttttatgagagatttcttttgtcatgt |
25921755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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