View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3478_high_2 (Length: 553)

Name: NF3478_high_2
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3478_high_2
NF3478_high_2
[»] chr3 (6 HSPs)
chr3 (242-533)||(1652178-1652471)
chr3 (1-188)||(1652528-1652715)
chr3 (44-130)||(7966774-7966861)
chr3 (25-130)||(30935086-30935192)
chr3 (100-139)||(25594209-25594249)
chr3 (100-188)||(34575004-34575091)
[»] chr4 (4 HSPs)
chr4 (25-145)||(43373786-43373907)
chr4 (58-150)||(43077265-43077358)
chr4 (47-153)||(35336856-35336964)
chr4 (99-184)||(28967214-28967300)
[»] chr8 (4 HSPs)
chr8 (20-187)||(30235769-30235937)
chr8 (44-184)||(32945353-32945491)
chr8 (44-80)||(25184905-25184941)
chr8 (25-73)||(41791021-41791069)
[»] chr1 (5 HSPs)
chr1 (242-383)||(31930417-31930558)
chr1 (44-130)||(4652072-4652159)
chr1 (62-130)||(37582405-37582474)
chr1 (112-188)||(11839570-11839646)
chr1 (44-72)||(17993876-17993904)
[»] chr7 (3 HSPs)
chr7 (44-188)||(9349997-9350141)
chr7 (297-381)||(29275813-29275899)
chr7 (108-145)||(13312186-13312223)
[»] chr5 (3 HSPs)
chr5 (44-183)||(31742448-31742588)
chr5 (75-188)||(31721986-31722099)
chr5 (95-131)||(6159822-6159858)
[»] chr6 (4 HSPs)
chr6 (44-106)||(6946905-6946967)
chr6 (44-186)||(12794401-12794544)
chr6 (100-133)||(20500293-20500326)
chr6 (54-150)||(26534421-26534517)
[»] chr2 (4 HSPs)
chr2 (1-130)||(18681320-18681450)
chr2 (44-133)||(29043990-29044080)
chr2 (99-183)||(10173236-10173321)
chr2 (108-145)||(22884809-22884846)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 242 - 533
Target Start/End: Complemental strand, 1652471 - 1652178
Alignment:
Q  242 gtcgggattaagtataactagctaggaattgaatataaatacttggtatgactagctataaataaatcctataacgttttatcactgtctttattactgc 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  1652471 gtcgggattaagtataactagctaggaattgaatataaatacttggtatgactagctataaataaattctataacattttatcactgtctttattactgc 1652372  T
Q  342 tcttaatgcatatctgacgtgcaatctgagattgatcttttgcctttgatttagaattagttaggtatgattattgaaatataaaataatattaaaattg 441  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1652371 tcttaatgcttatctgacgtgcaatctgagattgatcttttgcctttgatttagaattagttaggtatgattattgaaatataaaataatattaaaattg 1652272  T
Q  442 taagcttg--gttatagtgaccatttgtcacgtctgagccagattgggcggttttcatcaattcaaagaaaaatacaaacaagaatatgatcaa 533  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1652271 taagcttggtgttatagtgaccatttgtcacgtctgagccagattgggcggttttcatcaattcaaagaaaaatacaaacaagaatatgatcaa 1652178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 1652715 - 1652528
Alignment:
Q  1 tttttagtggttgttaagcatagaagtcaattttaggggatactgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgg 100  Q
    ||||||||||||||||| ||||||||||| ||||||||| |  |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  1652715 tttttagtggttgttaaacatagaagtcagttttagggggtgatgtttattttggtgggtgttgtccttatgagtgttgatcgcaagggtgtctttgtgg 1652616  T
Q  101 gtgtttatttcgggtgttccgcctatatacaacgcatttagtttgcactttttgttacatcgatctctgtttgtcttgtgcagagacc 188  Q
    |||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||| |||||| |||||||||||||||||||||||||    
T  1652615 gtgtttatttcgggtgttccgcctatatacgacgcctttagtttgtactttctgtgacatcggtctctgtttgtcttgtgcagagacc 1652528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 7966861 - 7966774
Alignment:
Q  44 tgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgttt-atttcgggtgttccgcctatatac 130  Q
    ||||||||||| |||| |||||| |||||  ||| |||| ||| |||||||||||  ||||||  |||||||||||||| ||||||||    
T  7966861 tgtttattttgatgggagttgtctttatgggtgtggatcgcaaaggtgtctttgtttgtgtttgttttcgggtgttccgtctatatac 7966774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 30935192 - 30935086
Alignment:
Q  25 agtcaattttaggggatactgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgttt-atttcgggtgttccgcc 123  Q
    ||||| ||||||||| |  ||||||||||||||| |||||  |||| |  ||||||| ||| || ||||||||| |||||||  ||||||||||| |||     
T  30935192 agtcagttttagggggtgatgtttattttggtggatgttgctcttaagggtgttgattacagggttgtctttgttggtgtttgttttcgggtgtttcgct 30935093  T
Q  124 tatatac 130  Q
    |||||||    
T  30935092 tatatac 30935086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 25594249 - 25594209
Alignment:
Q  100 ggtgttta-tttcgggtgttccgcctatatacaacgcattt 139  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  25594249 ggtgtttactttcgggtgttccgcctatatacgacgcattt 25594209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 34575004 - 34575091
Alignment:
Q  100 ggtgtttatttcgggtgttccgcctatatacaacgcatttagtttgcactttttgttacatcgatctctgtttgtcttgtgcagagacc 188  Q
    ||||||||||| | |||||||| ||||||| ||| | || |||||| ||||||||| ||| || | |||||||||||| |||| |||||    
T  34575004 ggtgtttatttagagtgttccgtctatatataacacctt-agtttgtactttttgtaacagcgttttctgtttgtcttatgcaaagacc 34575091  T

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Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 43373907 - 43373786
Alignment:
Q  25 agtcaattttaggggatactgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttg-tgggtgtttatttcgggtgttccgcc 123  Q
    ||||| ||||||||| |  |||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||| ||  ||||||||||| ||||    
T  43373907 agtcagttttagggggtgatgtttattttggtgggtgttgtccttatgtgtgttgatcacatgggtgtctttgttgggttttgttttcgggtgtttcgcc 43373808  T
Q  124 tatatacaacgcatttagtttg 145  Q
    |||||||||||| |||||||||    
T  43373807 tatatacaacgcctttagtttg 43373786  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 43077265 - 43077358
Alignment:
Q  58 ggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgttta-tttcgggtgttccgcctatatacaacgcatttagtttgcactt 150  Q
    |||| ||||||| ||| |||||||| || |||||||||||| |||||||| |||| ||||||| |||||||||| ||| |||| ||||| ||||    
T  43077265 ggtgatgtccttttgagtgttgatcgcaggggtgtctttgttggtgtttattttcaggtgttctgcctatatacgacgtattttgtttgtactt 43077358  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 35336856 - 35336964
Alignment:
Q  47 ttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgttt--atttcgggtgttccgcctatatacaacgcatttagttt 144  Q
    |||||||||||||||||||||||| || |||||||  ||   |||||||||| |||||||   |||||| ||||||| ||||||||  ||| ||| ||||    
T  35336856 ttattttggtgggtgttgtccttacgagtgttgattgcatatgtgtctttgttggtgttttattttcggatgttccgtctatatacggcgccttttgttt 35336955  T
Q  145 gcacttttt 153  Q
    | |||||||    
T  35336956 gtacttttt 35336964  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 28967214 - 28967300
Alignment:
Q  99 gggtgtttattt-cgggtgttccgcctatatacaacgcatttagtttgcactttttgttacatcgatctctgtttgtcttgtgcaga 184  Q
    |||||||||||| | ||||||||||||||||||| ||| ||| ||||| | | | |||| || ||||||||||| |||||| |||||    
T  28967214 gggtgtttattttcaggtgttccgcctatatacagcgcctttcgtttgtattatctgtttcaccgatctctgttcgtcttgagcaga 28967300  T

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Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 30235937 - 30235769
Alignment:
Q  20 atagaagtcaattttaggggatactgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgttt-atttcgggtgtt 118  Q
    |||| ||||| ||||||||| |  |||||||||||||||||||||||||| ||  |||||||| ||||||||||||||| |||||||  |||||| ||||    
T  30235937 ataggagtcagttttagggggtgatgtttattttggtgggtgttgtccttttgggtgttgatcgcaagggtgtctttgttggtgtttgttttcggatgtt 30235838  T
Q  119 ccgcctatatacaacgcatttagtttgcactttttgttacatcgatctctgtttgtcttgtgcagagac 187  Q
    ||||||||||||   || ||||||||| || || ||| ||| || ||| ||||||||||| ||||||||    
T  30235837 ccgcctatatacggagcctttagtttgtaccttctgtaacaccggtctttgtttgtcttgcgcagagac 30235769  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 32945491 - 32945353
Alignment:
Q  44 tgtttattttggtgggtgttg-tccttatgactgttgatcacaagggtgtctttgtgggtgtttatttcgggtgttccgcctatatacaacgcatttagt 142  Q
    ||||||||||||||| ||||| ||||||||| |||||||| |||||||||||| |   || ||  ||||||||||||||||||||||||||   ||||||    
T  32945491 tgtttattttggtggatgttgatccttatgagtgttgatcgcaagggtgtcttag---gttttgttttcgggtgttccgcctatatacaacatctttagt 32945395  T
Q  143 ttgcactttttgttacatcgatctctgtttgtcttgtgcaga 184  Q
    ||| || || ||| ||||| ||||||||  ||||||||||||    
T  32945394 ttgtaccttatgtaacatcaatctctgtccgtcttgtgcaga 32945353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 25184941 - 25184905
Alignment:
Q  44 tgtttattttggtgggtgttgtccttatgactgttga 80  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  25184941 tgtttattttggtgggtgttgtcctcatgagtgttga 25184905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 41791069 - 41791021
Alignment:
Q  25 agtcaattttaggggatactgtttattttggtgggtgttgtccttatga 73  Q
    ||||| ||||||||| |  |||||||||||||||| |||||||||||||    
T  41791069 agtcagttttagggggtgatgtttattttggtgggggttgtccttatga 41791021  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 242 - 383
Target Start/End: Original strand, 31930417 - 31930558
Alignment:
Q  242 gtcgggattaagtataactagctaggaattgaatataaatacttggtatgactagctataaataaatcctataacgttttatcactgtctttattactgc 341  Q
    ||||||||||||| ||| ||| |||||||| ||| |||||||||||| ||  | |||| ||||||||||||| | ||| ||||| |||||||||||||||    
T  31930417 gtcgggattaagtgtaattagttaggaatttaatgtaaatacttggtctggatggctacaaataaatcctattatgttatatcagtgtctttattactgc 31930516  T
Q  342 tcttaatgcatatctgacgtgcaatctgagattgatcttttg 383  Q
    ||||||||  | || | |||||||| ||||||||||||||||    
T  31930517 tcttaatgtttctccggcgtgcaatatgagattgatcttttg 31930558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 4652072 - 4652159
Alignment:
Q  44 tgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgttt-atttcgggtgttccgcctatatac 130  Q
    |||||| |||| |||||||||| ||||||  ||||||||||| || | | ||||| |||||||  |||| ||||||||||||||||||    
T  4652072 tgtttagtttgttgggtgttgtacttatgggtgttgatcacagggttttttttgttggtgtttgttttcaggtgttccgcctatatac 4652159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 37582405 - 37582474
Alignment:
Q  62 ttgtccttatgactgttgatcacaagggtgtctttgtgggtgttta-tttcgggtgttccgcctatatac 130  Q
    |||||||||||  ||||||||  |||||||||||||| | |||||| |||||||||||||| | ||||||    
T  37582405 ttgtccttatggttgttgatcgtaagggtgtctttgttgatgtttattttcgggtgttccgtcaatatac 37582474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 11839570 - 11839646
Alignment:
Q  112 gggtgttccgcctatatacaacgcatttagtttgcactttttgttacatcgatctctgtttgtcttgtgcagagacc 188  Q
    ||||||||||| | ||||| |||| ||||||||| ||||| ||| |||  | ||| |||| ||||||||||||||||    
T  11839570 gggtgttccgcttttatacgacgcctttagtttgtactttctgtaacacaggtctttgttcgtcttgtgcagagacc 11839646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 17993904 - 17993876
Alignment:
Q  44 tgtttattttggtgggtgttgtccttatg 72  Q
    |||||||||||||||||||||||||||||    
T  17993904 tgtttattttggtgggtgttgtccttatg 17993876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 9349997 - 9350141
Alignment:
Q  44 tgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtg-tttatttcgggtgttccgcctatatacaacgcatttagt 142  Q
    |||||||||||||||||||||||||||||   ||||||  || |||||||||||| |||| ||| || | ||||||||||||||||||  |||  || ||    
T  9349997 tgtttattttggtgggtgttgtccttatgggggttgattgcaggggtgtctttgttggtgattttttccaggtgttccgcctatatacggcgc-cttggt 9350095  T
Q  143 ttgcactttttgttacatcgatctctgtttgtcttgtgcagagacc 188  Q
    ||| ||||||||| ||| ||||||||||| ||||||||||||||||    
T  9350096 ttgtactttttgtaacaccgatctctgttcgtcttgtgcagagacc 9350141  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 29275813 - 29275899
Alignment:
Q  297 ctataaataaatcctataacgttttatcactgtctttattactgctctta--atgcatatctgacgtgcaatctgagattgatcttt 381  Q
    |||||||||||| ||||  |||| ||||  ||||||| ||||||||||||  || | | ||||||||||||||||||||||||||||    
T  29275813 ctataaataaattctatttcgttatatctgtgtctttgttactgctcttataatacttctctgacgtgcaatctgagattgatcttt 29275899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 13312186 - 13312223
Alignment:
Q  108 tttcgggtgttccgcctatatacaacgcatttagtttg 145  Q
    ||||||||||||||||||||||||| || |||||||||    
T  13312186 tttcgggtgttccgcctatatacaaagcctttagtttg 13312223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 31742448 - 31742588
Alignment:
Q  44 tgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgtttattt-cgggtgttccgcctatatacaacgcatttagt 142  Q
    |||||||||  ||||||||||||||||||  | |||||| |||||| |||||||  ||||||| ||| ||||||||||||||||||||  ||| ||| ||    
T  31742448 tgtttatttcagtgggtgttgtccttatgggttttgatcgcaagggagtctttgcaggtgtttgttttcgggtgttccgcctatatacggcgccttttgt 31742547  T
Q  143 ttgcactttttgttacatcgatctctgtttgtcttgtgcag 183  Q
    ||| |||| |||| ||| || |||||||| |||||||||||    
T  31742548 ttgtacttcttgtaacaccggtctctgttcgtcttgtgcag 31742588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 31721986 - 31722099
Alignment:
Q  75 tgttgatcacaagggtgtctttgtgggtgtttattt-cgggtgttccgcctatatacaacgcatttagtttgcactttttgttacatcgatctctgtttg 173  Q
    ||||||||||| ||||| ||||||  |||||| ||| ||||||||||| ||||||||  |||  |||||||| ||||| ||| |||||| |||||||| |    
T  31721986 tgttgatcacatgggtgcctttgttagtgtttgttttcgggtgttccgtctatatacggcgc-cttagtttgtactttctgtaacatcggtctctgttcg 31722084  T
Q  174 tcttgtgcagagacc 188  Q
    ||||||||| |||||    
T  31722085 tcttgtgcaaagacc 31722099  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 6159822 - 6159858
Alignment:
Q  95 ttgtgggtgtttatttcgggtgttccgcctatataca 131  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  6159822 ttgtaggtgtttattttgggtgttccgcctatataca 6159858  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 6946967 - 6946905
Alignment:
Q  44 tgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgttt 106  Q
    ||||||||||||||||| |||||||||||  |||||||| ||||||||||||||| |||||||    
T  6946967 tgtttattttggtgggttttgtccttatgggtgttgatcgcaagggtgtctttgttggtgttt 6946905  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 12794401 - 12794544
Alignment:
Q  44 tgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgtt-tatttcgggtgttccgcctatatacaacgcatttagt 142  Q
    ||||||||||||||| |||||||||| ||  |||||||| ||   |||||||||| ||||||   |||||| ||||||| ||||||||  ||| ||||||    
T  12794401 tgtttattttggtggatgttgtccttttgggtgttgatcgcagatgtgtctttgttggtgttcgttttcggatgttccgtctatatacggcgcctttagt 12794500  T
Q  143 ttgcactttttgttacatcgatctctgtttgtcttgtgcagaga 186  Q
    ||| || || |   |||||| ||||||||  |||| ||||||||    
T  12794501 ttgtaccttctaaaacatcggtctctgttcatcttatgcagaga 12794544  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 20500293 - 20500326
Alignment:
Q  100 ggtgtttatttcgggtgttccgcctatatacaac 133  Q
    ||||||||||| ||||||||||||||||||||||    
T  20500293 ggtgtttattttgggtgttccgcctatatacaac 20500326  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 26534517 - 26534421
Alignment:
Q  54 ggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgtttatttcgggtgttccgcctatatacaacgcatttagtttgcactt 150  Q
    |||||||| ||||||| ||  |||| ||  || |||||||||||| ||| ||  |||| |||||||||||||||||| |||| ||| ||||| ||||    
T  26534517 ggtgggtgatgtccttttgggtgtttattgcaggggtgtctttgttggtattgttttcaggtgttccgcctatatacgacgccttttgtttgtactt 26534421  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 18681320 - 18681450
Alignment:
Q  1 tttttagtggttgttaagcatagaagtcaattttaggggatactgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgg 100  Q
    ||||||||||||| |||| |||| ||||| ||||||||| |  |||||||||| | ||||||||| ||||||  |||||||  ||  ||| |||||||      
T  18681320 tttttagtggttggtaagtataggagtcagttttagggggtgatgtttattttagagggtgttgttcttatgggtgttgattgcagaggtttctttgtta 18681419  T
Q  101 gtgttt-atttcgggtgttccgcctatatac 130  Q
    || |||  |||||||||||||||||||||||    
T  18681420 gtatttgttttcgggtgttccgcctatatac 18681450  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 29044080 - 29043990
Alignment:
Q  44 tgtttattttggtgggtgttgtccttatgactgttgatcacaagggtgtctttgtgggtgttt-atttcgggtgttccgcctatatacaac 133  Q
    |||||||||||||||||| ||| ||| ||  |||||||| || |||||||||||| ||| |||  |||| |||||||||||||||||||||    
T  29044080 tgtttattttggtgggtgatgtacttttgggtgttgatcgcaggggtgtctttgttggtttttgttttcaggtgttccgcctatatacaac 29043990  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 10173321 - 10173236
Alignment:
Q  99 gggtgtttattt-cgggtgttccgcctatatacaacgcatttagtttgcactttttgttacatcgatctctgtttgtcttgtgcag 183  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||| | | | |||| || ||||||||||| |||||| ||||    
T  10173321 gggtgtttattttcaggtgttccgcctatatacaacgcttttagtttgtattatatgtttcaccgatctctgttcgtcttgagcag 10173236  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 22884846 - 22884809
Alignment:
Q  108 tttcgggtgttccgcctatatacaacgcatttagtttg 145  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  22884846 tttcgggtgttccgcctatatacgacgcctttagtttg 22884809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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