View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_high_22 (Length: 244)
Name: NF3478_high_22
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4571130 - 4570889
Alignment:
| Q |
1 |
tgattgacaatacaacttgaattcacaatcatctccggtcttaaacatacgactaagattacaactgcaagaactattgactgcatgcggtccatttctg |
100 |
Q |
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| T |
4571130 |
tgattgacaatacaacttgaattcacaatcatctccggtcttaaacatacgactaagattacaactgcaagaactattgactgcatgcggtccatttctg |
4571031 |
T |
|
| Q |
101 |
taatattcatgaaccttgcatagtctatttaatttcaattgtttatttatttgctcttgacataaacttttgttgtgtggaaatgtttttctttgttggg |
200 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4571030 |
taatattcatggaccttgcgtagtctatttaatttcaattgtttatttatttgctcttgacataaacttttgttgtgtggaaatgtttttctttgttggg |
4570931 |
T |
|
| Q |
201 |
aaat--aaaagcttgtatagttagacatgttttctccctttg |
240 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||| |
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| T |
4570930 |
aaataaaaaagcttgtatagttagacatgttttctccttttg |
4570889 |
T |
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