View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_high_5 (Length: 439)
Name: NF3478_high_5
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 48 - 420
Target Start/End: Complemental strand, 42359088 - 42358710
Alignment:
| Q |
48 |
taagataatagtagttatttgtcaccttttgttgcggcatatatgagccaaataggagatgacgtcgccagtaaaccaaccgtgtattgcggacgacacg |
147 |
Q |
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| T |
42359088 |
taagataatagtagttatttgtcaccttttgttgcggcatatatgagccaaataggagatgacgtcgccagtaaaccaaccgtgtattgcggacgacacg |
42358989 |
T |
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| Q |
148 |
ttcactatccttccttctatccctgtctcctttgccgtttcaaccatcttcttcatcaacatttttgtcaacacaaaatgacctgcaccacaatat--at |
245 |
Q |
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| T |
42358988 |
ttcactatccttccttcaatccctgtctcctttgccgtttcaaccatcttcttcatcaacatttttgtcaacacaaaatgacctgcaccacaatattaat |
42358889 |
T |
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| Q |
246 |
taatta-attaaattatatgcatatcaaat------nnnnnnntttgttgtaatcttactcacctaaataattagtggcaaaggtcatttcaactccatc |
338 |
Q |
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| T |
42358888 |
taattatattatattatatgcatatcaaattaaaaaaataaaaattgttgtaatcttactcacctaaataattagtggcaaaggtcatttcaactccatc |
42358789 |
T |
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| Q |
339 |
ctcagagattgcgtgctcttctgcaaacttcccagcattgtttctagtaaacagcaacaacaacactagtcaacaatcaagt |
420 |
Q |
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| T |
42358788 |
ctcagagattgcgtgctcttctgcaaacttcccagcattgtttctagtaaacag---caacaacactagtcaacaatcaagt |
42358710 |
T |
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