View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_high_6 (Length: 436)
Name: NF3478_high_6
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 436
Target Start/End: Original strand, 39689231 - 39689667
Alignment:
| Q |
7 |
tcgaagaaaatagataaaattccgtttgtttcggaatgtgaatcga------acaagtggtgtatctccctctgtctgcatcatttaaacannnnnnnat |
100 |
Q |
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| T |
39689231 |
tcgaacaaaatagataaaattccgtttgtttcagaatgtgaatcgagaatacacaagtggtgtatctccctctgtctgcatcatttaaacatttttttat |
39689330 |
T |
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| Q |
101 |
ttaagaaga--tagtgtcaattcaaaagcgtgcatgtacccaacacagattacacacacacaagaagaaaagcacgatatccgcgtgttattttactgtg |
198 |
Q |
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| T |
39689331 |
ttaagaagagatagtgtcaattcaaaagcgtgcatgtacccaacacagattacacacacacaagaagaaaagcacgatatccgcgtgttattttactgtg |
39689430 |
T |
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| Q |
199 |
catttgtgacgcggtcctaactcataaccctatacgagagtggtccgctgttttagcttagcatttgcatgatgagtgatcagcaatccttggccggtga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39689431 |
catttgtgacgcggtcctaactcataaccctatacgagagtggtccgctgttttagcttagcatttgcatgatgagtgatcagcaatccttggccggtga |
39689530 |
T |
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| Q |
299 |
agttcttggcccactaaaaaacaatcacatactattattatatctcnnnnnnnnnggtatctaaattaaaatagcctcaaactcaaagatgtccttgttg |
398 |
Q |
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| T |
39689531 |
agttcttggcccactaaaaaacaatcacatactattattatatctc-aaaaaaaaggtatctaaattaaaatagcctcaaactcaaagatgtccttgttg |
39689629 |
T |
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| Q |
399 |
aggagtagggaacaacacagagtcggaaattagttgtt |
436 |
Q |
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| T |
39689630 |
aggagtagggaacaacaaagagtcaaaaattagttgtt |
39689667 |
T |
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