View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_high_9 (Length: 408)
Name: NF3478_high_9
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 1573457 - 1573839
Alignment:
| Q |
18 |
aagactttctatgatcaagtgnnnnnnngaaggattttgtggggatggattaatgagactgatgctgaaagtgatgacttggaaaaaggttgggcatctc |
117 |
Q |
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| T |
1573457 |
aagactttctatgatcaagtgaaaaaaagaaggattttgtggggatggattaatgagactgatgctgaaagtgatgacttggaaaaaggttgggcatctc |
1573556 |
T |
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| Q |
118 |
ttcaggtatgtattatacataacatgctgaaattacatcaatttgccaaagctgaaatgcattgcaaaatgttggatagagcaattcataaaatcttgta |
217 |
Q |
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| T |
1573557 |
ttcaggtatgtattatacataacatactgaaattacatcaatttgccaaagctgaaatgcattgcaaaatgtttgatagagcaattcataaaaccttgta |
1573656 |
T |
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| Q |
218 |
cac-annnnnnncttcagacaattccaagaacagtgctttttgatcagaagactggaactaatttgcttcaatggccagtagaagaagtagaaagcttaa |
316 |
Q |
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| T |
1573657 |
cacaatttttttcttcagacaattccaagaacagtgctttttgatcagaagactggaactaatttgcttcaatggccagtagaagaagtagaaagcttaa |
1573756 |
T |
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| Q |
317 |
gactgagtagtgatgaatatgcagaagtagttgttacacctggctctattgttccattgaacattactcaagcaacacaggtt |
399 |
Q |
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| T |
1573757 |
gactgagtagtgatgaatatgcagaagtagttgttacacctggctctgttgttccattgaacattactcaagcaacacaggtt |
1573839 |
T |
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