View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_low_10 (Length: 401)
Name: NF3478_low_10
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 388
Target Start/End: Complemental strand, 6360793 - 6360414
Alignment:
| Q |
5 |
atgaagaaacacacattttctagtgttttggttccaagtccctttggttgtcttattttgtcatggtcattgaagattgctgaaactactactacattgt |
104 |
Q |
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| T |
6360793 |
atgaagaaacacacattttctagtgttttgattccaagtccctttggttgtcttattttgtcatggtcattgaagattgctgaaactactactactttgt |
6360694 |
T |
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| Q |
105 |
cacacttttccatggccattctatctgcatcaaaatacaaacaaacaagcaaattacaatcctaaacaagcaaatttcattgaataacaattttccatat |
204 |
Q |
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| T |
6360693 |
cacatttttccatggccattctatctgcatcaaaatacaaacaa----gcaaattacaatcctaaacaagcaaatttcattgaataacaattttccatat |
6360598 |
T |
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| Q |
205 |
cnnnnnnncttaaattcggggttttaagaaaaggtatgtgacaacatcaatatttttgtatgtatctatgactatatcgtgattgcggttaaaatcgcat |
304 |
Q |
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| T |
6360597 |
caaaaaaacttaaattcggggttttaagaaaaggtatgtaacaacatcaatatttttttatgtatctatgactatatcgtgattgtggttaaaatcgcat |
6360498 |
T |
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| Q |
305 |
gaagcacaatgtcttgtatgtttggattggcggtgagttttgcaaaatcacaatggcagtgtgatagtgtgaagttccaaagtg |
388 |
Q |
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| T |
6360497 |
gaagcacaatgtcttgtatgtttggattggcggtgagttttgcaaaatcacaatgtcagtgtgatagtgtgaagctccaaagtg |
6360414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 13033959 - 13034011
Alignment:
| Q |
17 |
acattttctagtgttttggttccaagtccctttggttgtcttattttgtcatg |
69 |
Q |
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| T |
13033959 |
acattttctagtgttttgggtccatgtacatttggttatcttattttgtcatg |
13034011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 39343201 - 39343244
Alignment:
| Q |
319 |
tgtatgtttggattggcggtgagttttgcaaaatcacaatggca |
362 |
Q |
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| T |
39343201 |
tgtatgtttggattggcggtgagtttagcaaaatcaccatggca |
39343244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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