View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_low_13 (Length: 316)
Name: NF3478_low_13
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 45397553 - 45397251
Alignment:
| Q |
1 |
cacgtcatatatattattggccttattcgtcatcgagtcaactttattttcccaactttagacaattacgtatacatcttttgccataattatgaacgtc |
100 |
Q |
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| T |
45397553 |
cacgtcatatatattattggccttattcgtcatcgagtcaactttattttcccaactttagacaattacgtatacatcttttgccataattatgaacgtc |
45397454 |
T |
|
| Q |
101 |
atgagttttggccaattgtctaattttgttgccaattcatttggaattttgttctttttccgtgtgtgtaaaggaatatcaataagatgaattagtgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45397453 |
atgagttttggccaattgtctaattttgttgccaattcatttggaattttgttctttttccgtgtgcgtaaaggaatatcaataagatgaattagtgaag |
45397354 |
T |
|
| Q |
201 |
tgatgcaaacacacgagttgtgaaggacatgcattgtggtgcaattccaaagaactagctagaaaagagtgtatatcccgaaatcttttaaaattcaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45397353 |
tgatgcaaacacacgagttgtgaaggacatgcattgtggtgcaattccaaagaactagctagaaaaga--gtatatcccgaaatcttttaaaattcaaat |
45397256 |
T |
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| Q |
301 |
ttcat |
305 |
Q |
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||||| |
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| T |
45397255 |
ttcat |
45397251 |
T |
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