View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_low_18 (Length: 268)
Name: NF3478_low_18
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 32508073 - 32507817
Alignment:
| Q |
1 |
ctaatgatgcacaatcctcaccaagtgtaataaaggatatgaaattattgaaaataaggcttcaactaaaatgtgcttacaaatacacgatttatatgat |
100 |
Q |
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| T |
32508073 |
ctaatgatgcacaatcctcaccaagtgtaataaaggatatgaaattattgaaaataaggcttcaactaaaatgtgcttacaaatacacgatttatatgat |
32507974 |
T |
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| Q |
101 |
aatgacaaggcctggnnnnnnnncaagtcaaaccatgatgaacaatgtcaagccagtgttttagtttcctcaatgattgtaagcaacacat---tacctt |
197 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32507973 |
aatgacaaggcctggaaaaaaaaccagtcaaaccatgatgaacaatgtcaagccagtgttttagtttcctcaatgattgtaagcaacacatcattacctt |
32507874 |
T |
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| Q |
198 |
aaagcagaggccaagccaaaaggtaacttgtatacttccttcaatacctcattgatg |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32507873 |
aaagcagaggccaagccaaaaggtaacttgtatacttccttcaatacctcattgatg |
32507817 |
T |
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