View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3478_low_22 (Length: 244)

Name: NF3478_low_22
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3478_low_22
NF3478_low_22
[»] chr5 (5 HSPs)
chr5 (154-244)||(31099622-31099712)
chr5 (154-244)||(31141639-31141729)
chr5 (1-66)||(31103093-31103158)
chr5 (66-109)||(31099768-31099811)
chr5 (66-109)||(31141540-31141583)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 31099622 - 31099712
Alignment:
Q  154 gatgaccatgatcacagtaagtgtattgcataacagttgtgattgtgatacaattttcttactttattctcatgtcctttttctttgcttc 244  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31099622 gatgaccatgatcacagtatgtgtattgcataacagttgtgattgtgatacaattttcttactgtattctcatgtcctttttctttgcttc 31099712  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 31141729 - 31141639
Alignment:
Q  154 gatgaccatgatcacagtaagtgtattgcataacagttgtgattgtgatacaattttcttactttattctcatgtcctttttctttgcttc 244  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31141729 gatgaccatgatcacagtatgtgtattgcataacagttgtgattgtgatacaattttcttactgtattctcatgtcctttttctttgcttc 31141639  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31103093 - 31103158
Alignment:
Q  1 attttgttatgtaattatgtttgatcattttctattaaagagatgattaattcaaaaagttttgta 66  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31103093 attttgctatgtaattatgtttgatcattttctattaaagagatgattaattcaaaaagttttgta 31103158  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 31099768 - 31099811
Alignment:
Q  66 aaacaaaggaattgaaacaagcaaaacaccacttaaacctgaag 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  31099768 aaacaaaggaattgaaacaagcaaaacaccacttaaatctgaag 31099811  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 31141583 - 31141540
Alignment:
Q  66 aaacaaaggaattgaaacaagcaaaacaccacttaaacctgaag 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  31141583 aaacaaaggaattgaaacaagcaaaacaccacttaaatctgaag 31141540  T

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