View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_low_28 (Length: 210)
Name: NF3478_low_28
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30666178 - 30666373
Alignment:
| Q |
1 |
ctgagcatatttggaagagcttctttggtcttgcttcatgaaataagcacttgaattaggccatgtttgcacaataagtttattaagaccttatagcata |
100 |
Q |
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| T |
30666178 |
ctgagcatatttggaagagcttctttggtcttgcttcatgaaataagcacttgaattaggccatgtttgcacaataagtttattaagaccttatagcata |
30666277 |
T |
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| Q |
101 |
aacgttgatcgtatatgtattagctatttcaataacaaagagataaaataaattcaaataagccataaactgcttttgtacgctatcttgcagtgc |
196 |
Q |
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| T |
30666278 |
aacattgatcgtatatgtataagctatttctataacaaaaagataaaataaattcaaataagccataaactgcttttgtacgctatcttggagtgc |
30666373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 40122882 - 40122839
Alignment:
| Q |
114 |
tatgtattagctatttcaataacaaagagataaaataaattcaaa |
158 |
Q |
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| T |
40122882 |
tatgtataagctatttcaataacaaa-agataaaataaagtcaaa |
40122839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 36151635 - 36151591
Alignment:
| Q |
114 |
tatgtattagctatttcaataacaaagagataaaataaattcaaat |
159 |
Q |
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| T |
36151635 |
tatgtataagctatttcaataacaaa-agataaaataaagtcaaat |
36151591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 47020447 - 47020491
Alignment:
| Q |
114 |
tatgtattagctatttcaataacaaagagataaaataaattcaaat |
159 |
Q |
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| T |
47020447 |
tatgtactagctatttcaataacaaag-gataaaataaatccaaat |
47020491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 23895276 - 23895319
Alignment:
| Q |
114 |
tatgtattagctatttcaataacaaagagataaaataaattcaaa |
158 |
Q |
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| T |
23895276 |
tatgtataagctatttctataacaaa-agataaaataaattcaaa |
23895319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 14209225 - 14209260
Alignment:
| Q |
122 |
agctatttcaataacaaagagataaaataaattcaaa |
158 |
Q |
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| T |
14209225 |
agctatttcaataacaaa-agataaaataaattcaaa |
14209260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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