View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_low_4 (Length: 451)
Name: NF3478_low_4
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 43726004 - 43725597
Alignment:
| Q |
18 |
taatagagtgatatgtactagatatatagataaacggatagatagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgagg |
117 |
Q |
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| T |
43726004 |
taatagagtgatatgtactagatatatagataaacggatagatagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgagg |
43725905 |
T |
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| Q |
118 |
ttgttgagagatgtgttgttgagaaaccatttcatcatcatcaacagaacaaagttgaagttccttgtccatgnnnnnnnattgtaatgtcactaccaaa |
217 |
Q |
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| T |
43725904 |
ttgttgaga---------------aaccatttcatcatcgtcaacagaacaaagttgaagttccttgtccatgtttttttattgtaatgtcactaccaaa |
43725820 |
T |
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| Q |
218 |
ccaagatattccttcctatcgtatatatgtaaaaggaagatggaaagacaagaagagtgaagtgtttatataaagtagcaatgtccatgcaaataattgg |
317 |
Q |
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| T |
43725819 |
ccaagatattccttcctatcgtatatatgtaaaaggaagatggaaagacaagaagagtgaagtgtttatttaaagtagcaatgtccatgcaaataattgg |
43725720 |
T |
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| Q |
318 |
attttgtttgattgaagtttggtgtgaaaagatgtcgatgcttgcgaattgcaaacgtttttgcgtgttcat---gtgtgaatgcatttgctaaaaatgc |
414 |
Q |
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| T |
43725719 |
at----tttgattgaagtttggtgtgaaaagatgtcgatgcttgcgaattgcaaacgtttttgcgtgttcatgtggtgtgaatgcatttgctaaaaatgc |
43725624 |
T |
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| Q |
415 |
atatctgtaatgcactgtccctctgtg |
441 |
Q |
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| T |
43725623 |
atatctgtaatgcactgtccctctgtg |
43725597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 43697576 - 43697509
Alignment:
| Q |
59 |
atagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgaggttgttgaga |
126 |
Q |
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| T |
43697576 |
atagataagataccaattataaaaggcatggtgataagaccacccttgcgtctttgtggttgttgaga |
43697509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 43712478 - 43712419
Alignment:
| Q |
60 |
tagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgaggtt |
119 |
Q |
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| T |
43712478 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttgtggtt |
43712419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 43684929 - 43684896
Alignment:
| Q |
156 |
catcaacagaacaaagttgaagttccttgtccat |
189 |
Q |
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| T |
43684929 |
catcaacagaacaaagttgaagttccttgtccat |
43684896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 43685022 - 43684969
Alignment:
| Q |
60 |
tagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtcttt |
113 |
Q |
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| T |
43685022 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttcttt |
43684969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 43712385 - 43712352
Alignment:
| Q |
156 |
catcaacagaacaaagttgaagttccttgtccat |
189 |
Q |
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| T |
43712385 |
catcaacagaacaaagttgaagttccttgtccat |
43712352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 43697485 - 43697452
Alignment:
| Q |
156 |
catcaacagaacaaagttgaagttccttgtccat |
189 |
Q |
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| T |
43697485 |
catcaacagaacaaagctgaagttccttgtccat |
43697452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 25270128 - 25270062
Alignment:
| Q |
54 |
gatagatagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgaggttg |
120 |
Q |
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| T |
25270128 |
gatagatagataacgtaccaatgatgaaaggcatagtgataagaccacccttgctcctttgtggttg |
25270062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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