View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3478_low_7 (Length: 413)
Name: NF3478_low_7
Description: NF3478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3478_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 3 - 397
Target Start/End: Original strand, 38767660 - 38768059
Alignment:
| Q |
3 |
caaaggatacaaacagagagaagcatcacgtcttgcagaccttctagccttcagaaaggttgtgtgtgtctatacatatatatat--------------t |
88 |
Q |
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| T |
38767660 |
caaaggatacacacagagagaagcatcacgtcttgcagaccttctagccttcagaaaggttgtgtgtgtctatatatatatatatatatatatatatatt |
38767759 |
T |
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| Q |
89 |
ctcttgcatgtactagctagtaatgttagggaccaatttctgaaccttctccttaacacaccattaggtcaaagcaaggctagggggacgtgttagacta |
188 |
Q |
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| T |
38767760 |
ctcttgcatgtactag----taatgttagggaccaatttctgaaccttctccttaacacaccattaggtcaaagcaaggctaggtggacgtgttagacta |
38767855 |
T |
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| Q |
189 |
ataatatctggaggtgcagccttaagctccgagattgaagaattcttgcgtgtcactacttgtgcctttgtatgccaaggctatggtaaggaccttggac |
288 |
Q |
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| T |
38767856 |
ataatatctggaggtgcagccttaagctccgagattgaagaattcttgcgtgtcactacttgtgcctttgtatgccaaggctatggtaaggaccttggac |
38767955 |
T |
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| Q |
289 |
caaattgcttatatataatataagtttgtagggagctatacaatataatgaatgatacactgatattaaggttaatccaggtttgacagaaacatgtgga |
388 |
Q |
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| T |
38767956 |
caaattgcttat-----atataagtttgtagggagctatacaatataatgaatgatacactgatattaaggttaatccaggtttgacagaaacatgtgga |
38768050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 44996725 - 44996597
Alignment:
| Q |
152 |
ttaggtcaaagcaaggctagggggacgtgttagactaataatatctggaggtgcagccttaagctccgagattgaagaattcttgcgtgtcactacttgt |
251 |
Q |
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| T |
44996725 |
ttaggtcaaagctcggttaggaggacgtgttcgactaataataaccggaggtgcaccattgagttcagagattgaagaatttttgcgtgttacttctggt |
44996626 |
T |
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| Q |
252 |
gcctttgtatgccaaggctatggtaagga |
280 |
Q |
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| T |
44996625 |
gcttttgtatgtcaaggctatggtaagga |
44996597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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