View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3479_high_1 (Length: 699)

Name: NF3479_high_1
Description: NF3479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3479_high_1
NF3479_high_1
[»] chr8 (1 HSPs)
chr8 (11-680)||(34431280-34431949)


Alignment Details
Target: chr8 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 11 - 680
Target Start/End: Complemental strand, 34431949 - 34431280
Alignment:
Q  11 cagagaccaagtaaagagctcaattctccaataccatttacccccattttgaaatttaaaatttgtaaccataagtaaaatcttttgagnnnnnnntcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||||    
T  34431949 cagagaccaagtaaagagctcaattctccaataccatttacccccattttgcaatttaaaatttgtaaccataagtaaaatcttttgagaaaaaaatcaa 34431850  T
Q  111 ttatttctgaatcagctagtgctcaaaggtctaaaacataaggcacaaggaaaagtggataaccatgcaactagagcccaattgaatcggtgaatcactt 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431849 ttatttctgaatcagctagtgctcaaaggtctaaaacataatgcacaaggaaaagtggataaccatgcaactagagcccaattgaatcggtgaatcactt 34431750  T
Q  211 ttgagatcaaagagaactccttttatcagaaaccagttcatgcaaattaatgcagaaaataaaacatagtataagccttactgctccaacatctctttta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431749 ttgagatcaaagagaactccttttatcagaaaccagttcatgcaaattaatgcagaaaataaaacatagtataagccttactgctccaacatctctttta 34431650  T
Q  311 tctagtcccatgccaaatgccacagttgcaacaaccttcatnnnnnnnttgcaaggtatcagtcggacaagacatgctgtatttttctttttataagcct 410  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431649 tctagtcccatgccaaatgccacagttgcaacaaccttcataaaaaaattgcaaggtatcagtcggacaagacatgctgtatttttctttttataagcct 34431550  T
Q  411 agcaatgttgtattagaagcattgcatcataaaattcataaattgagtgattatctcaccactctgatcttgtttgaaccaaacaactcctgtacgtagc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431549 agcaatgttgtattagaagcattgcatcataaaattcataaattgagtgattatctcaccactctgatcttgtttgaaccaaacaactcctgtacgtagc 34431450  T
Q  511 cacgttcctttgcagaaataccactatgataactctaaatgatgatcacgtcaattgtaagatttaacattcagtgtcaagggttacacaatacacacaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431449 cacgttcctttgcagaaataccactatgataactctaaatgatgatcacgtcaattgtaagatttaacattcagtgtcaagggttacacaatacacacaa 34431350  T
Q  611 tgtcatgcaatatcaaaaagagaaatatggagctaacctttgccttgatattgttatcattcaaatatct 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431349 tgtcatgcaatatcaaaaagagaaatatggagctaacctttgccttgatattgttatcattcaaatatct 34431280  T

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