View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3479_low_2 (Length: 556)
Name: NF3479_low_2
Description: NF3479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3479_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 14 - 546
Target Start/End: Original strand, 42903113 - 42903636
Alignment:
| Q |
14 |
acaagaacagctcctgagaattatatgaacagaattggtgatttatataaagaaagtaaatatttatggagagaaaaatccaatcaaaaagttcacaagt |
113 |
Q |
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| T |
42903113 |
acaagaacagctcctgagaattatatgaacagaattggtgatttatgtaaagaaagtaaacatttatggagagaaaaatccaatcaaaaagttcacaagt |
42903212 |
T |
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| Q |
114 |
tatgaataaagtccaaatctgacctggcacagctctaccagataaaactgctagtgccacatatatatcttcaggatcttttggttgaaaatcaaaaact |
213 |
Q |
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| T |
42903213 |
tatgaataaagtccaaatctgacctggcacagctctaccagataaaactgctagtgccacatatatatcttcaggatcttttggttgaaaatcaaaaact |
42903312 |
T |
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| Q |
214 |
agaacctgaaaataaatactagcaataaaatataatataagacgttctctacgtctcgaggcctgctccggcctgaatagccttcggactcaactcggct |
313 |
Q |
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| T |
42903313 |
agaacctgaaaataaatactagcaataa-----aatataagacgttctctacgtctcgaggcctgctccggcctgaatagccttcggactcaactcggct |
42903407 |
T |
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| Q |
314 |
aaacnnnnnnncttaataaaaattaacaccaataaaatgtaagagaggaaggaataggattggaacctgtgaaggtgaggaaggtttgatgatgaccatg |
413 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42903408 |
aaactttttttcttaataaa----aacaccaataaaatgtaagagaggaaggaataggattggaacctgtgaaggtgaggaaggtttgatgatgaccatg |
42903503 |
T |
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| Q |
414 |
aaatgctgcaaatcccaaatattaagggagtaagcagcagacataagcaattgtggtggtccctttgaagcccttagaggcattgctgccacatacactt |
513 |
Q |
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| T |
42903504 |
aaatgctgcaaatcccaaatattaagggagtaagcagcagacataagcaattgtggtggtccctttgaagcccttagaggcattgctgccacatacactt |
42903603 |
T |
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| Q |
514 |
cctctctgcctcttaccattcttcttgcctttg |
546 |
Q |
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| T |
42903604 |
cctctctgcctcttaccattcttcttgtctttg |
42903636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 42908538 - 42908596
Alignment:
| Q |
470 |
tggtccctttgaagcccttagaggcattgctgccacatacacttcctctctgcctctta |
528 |
Q |
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| T |
42908538 |
tggtccctttgaagcccttagaggcattgctgccacatacacttcctctctgcctctta |
42908596 |
T |
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