View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3479_low_4 (Length: 248)

Name: NF3479_low_4
Description: NF3479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3479_low_4
NF3479_low_4
[»] chr1 (35 HSPs)
chr1 (1-137)||(18583324-18583460)
chr1 (64-134)||(27795136-27795206)
chr1 (74-137)||(41584361-41584424)
chr1 (62-137)||(41584445-41584520)
chr1 (1-38)||(33611289-33611326)
chr1 (89-137)||(28866410-28866458)
chr1 (85-137)||(38885540-38885592)
chr1 (85-137)||(49677790-49677842)
chr1 (75-134)||(9445972-9446030)
chr1 (74-137)||(24472608-24472671)
chr1 (62-132)||(44572885-44572955)
chr1 (1-34)||(6223634-6223667)
chr1 (1-38)||(23442981-23443018)
chr1 (1-38)||(34006504-34006541)
chr1 (64-137)||(40907714-40907787)
chr1 (1-38)||(42546211-42546248)
chr1 (1-38)||(49786511-49786548)
chr1 (85-137)||(33611190-33611242)
chr1 (1-36)||(40650556-40650591)
chr1 (102-137)||(44938079-44938114)
chr1 (62-137)||(49786572-49786647)
chr1 (62-133)||(52744627-52744698)
chr1 (1-38)||(7011453-7011490)
chr1 (1-38)||(17000622-17000659)
chr1 (1-38)||(28866509-28866546)
chr1 (1-34)||(38885456-38885489)
chr1 (92-137)||(40650484-40650529)
chr1 (1-38)||(40907813-40907850)
chr1 (1-38)||(41584544-41584581)
chr1 (1-34)||(45046733-45046766)
chr1 (1-38)||(45567769-45567806)
chr1 (1-38)||(52744722-52744759)
chr1 (75-123)||(34006578-34006626)
chr1 (85-137)||(42546295-42546346)
chr1 (62-142)||(45046625-45046705)
[»] chr2 (32 HSPs)
chr2 (64-137)||(38065352-38065425)
chr2 (85-137)||(15994894-15994946)
chr2 (62-137)||(17474573-17474648)
chr2 (62-137)||(25217549-25217624)
chr2 (62-137)||(27670800-27670875)
chr2 (62-137)||(33452217-33452292)
chr2 (75-137)||(17133042-17133104)
chr2 (74-136)||(30763966-30764028)
chr2 (85-137)||(42894704-42894756)
chr2 (67-142)||(33440280-33440355)
chr2 (88-135)||(42604803-42604850)
chr2 (62-137)||(44465515-44465590)
chr2 (95-137)||(35251269-35251311)
chr2 (75-133)||(39447474-39447532)
chr2 (75-137)||(41202964-41203026)
chr2 (1-38)||(38308706-38308743)
chr2 (5-38)||(41854778-41854811)
chr2 (1-38)||(42478986-42479023)
chr2 (85-137)||(32187659-32187711)
chr2 (1-37)||(41510304-41510340)
chr2 (85-137)||(41854678-41854730)
chr2 (82-133)||(18204871-18204922)
chr2 (1-38)||(5507662-5507699)
chr2 (64-137)||(5507726-5507799)
chr2 (1-34)||(13704690-13704723)
chr2 (1-38)||(32187743-32187780)
chr2 (64-133)||(34517409-34517478)
chr2 (93-134)||(38308610-38308651)
chr2 (1-38)||(41203060-41203097)
chr2 (85-134)||(41510207-41510256)
chr2 (93-137)||(16750219-16750263)
chr2 (2-34)||(34817345-34817377)
[»] chr7 (32 HSPs)
chr7 (62-142)||(3304526-3304606)
chr7 (65-137)||(33573828-33573900)
chr7 (62-137)||(37518043-37518118)
chr7 (62-137)||(47202791-47202866)
chr7 (85-137)||(8155226-8155278)
chr7 (85-137)||(36468319-36468371)
chr7 (62-137)||(9152095-9152170)
chr7 (75-142)||(7115044-7115111)
chr7 (62-137)||(42925420-42925495)
chr7 (3-37)||(3304638-3304672)
chr7 (85-142)||(6466912-6466969)
chr7 (1-34)||(26555040-26555073)
chr7 (1-38)||(36468416-36468453)
chr7 (1-38)||(36629446-36629483)
chr7 (85-137)||(24041977-24042029)
chr7 (1-36)||(7115151-7115186)
chr7 (75-134)||(16278330-16278389)
chr7 (1-36)||(31643283-31643318)
chr7 (78-137)||(42864881-42864940)
chr7 (75-130)||(43186102-43186157)
chr7 (1-35)||(24690215-24690249)
chr7 (75-137)||(30861400-30861462)
chr7 (8-38)||(33573922-33573952)
chr7 (75-137)||(48705779-48705841)
chr7 (64-137)||(19225378-19225451)
chr7 (64-137)||(31985297-31985370)
chr7 (1-38)||(42864981-42865018)
chr7 (1-38)||(42925519-42925556)
chr7 (1-38)||(47202730-47202767)
chr7 (1-37)||(16983613-16983649)
chr7 (85-137)||(26554943-26554995)
chr7 (85-137)||(31643367-31643419)
[»] chr8 (19 HSPs)
chr8 (75-134)||(33472294-33472353)
chr8 (62-137)||(11698096-11698171)
chr8 (1-38)||(31519771-31519808)
chr8 (75-142)||(42280666-42280733)
chr8 (85-137)||(27927730-27927782)
chr8 (85-137)||(28917102-28917154)
chr8 (62-137)||(3094989-3095064)
chr8 (62-137)||(8885232-8885307)
chr8 (1-36)||(36980812-36980847)
chr8 (75-137)||(36980886-36980948)
chr8 (75-137)||(40994987-40995049)
chr8 (1-38)||(6395327-6395364)
chr8 (1-38)||(11698195-11698232)
chr8 (5-38)||(36165716-36165749)
chr8 (1-38)||(44106466-44106503)
chr8 (85-137)||(4259462-4259514)
chr8 (85-137)||(10840533-10840585)
chr8 (86-137)||(31519674-31519723)
chr8 (75-131)||(41530899-41530954)
[»] chr5 (31 HSPs)
chr5 (62-137)||(7884460-7884535)
chr5 (74-137)||(14112143-14112206)
chr5 (75-134)||(16429258-16429317)
chr5 (62-137)||(26898583-26898658)
chr5 (85-142)||(6157020-6157077)
chr5 (85-137)||(26190102-26190154)
chr5 (1-137)||(31928905-31929041)
chr5 (62-133)||(12464902-12464973)
chr5 (75-134)||(27212982-27213041)
chr5 (74-133)||(31221123-31221182)
chr5 (75-129)||(5456335-5456389)
chr5 (75-137)||(26622397-26622459)
chr5 (75-137)||(32841751-32841813)
chr5 (1-38)||(7884398-7884435)
chr5 (1-38)||(31221218-31221255)
chr5 (85-137)||(40619765-40619817)
chr5 (86-137)||(37183561-37183612)
chr5 (1-38)||(4064598-4064635)
chr5 (1-38)||(15957954-15957991)
chr5 (1-38)||(20891818-20891855)
chr5 (1-38)||(23269542-23269579)
chr5 (1-38)||(26190201-26190238)
chr5 (1-38)||(26898682-26898719)
chr5 (1-38)||(38372506-38372543)
chr5 (92-132)||(6800725-6800765)
chr5 (85-137)||(11185967-11186019)
chr5 (1-37)||(24203564-24203600)
chr5 (85-137)||(26093748-26093800)
chr5 (1-37)||(32841850-32841886)
chr5 (75-119)||(38372580-38372624)
chr5 (85-137)||(38692562-38692614)
[»] chr4 (39 HSPs)
chr4 (62-137)||(25752223-25752298)
chr4 (85-137)||(19835855-19835907)
chr4 (62-137)||(46440052-46440127)
chr4 (1-38)||(32442061-32442098)
chr4 (62-142)||(7931968-7932048)
chr4 (85-137)||(14473995-14474047)
chr4 (85-137)||(34973199-34973251)
chr4 (62-133)||(38417103-38417174)
chr4 (75-137)||(25538758-25538820)
chr4 (75-137)||(53893806-53893868)
chr4 (76-137)||(49397337-49397398)
chr4 (85-133)||(6003457-6003505)
chr4 (85-137)||(6228593-6228645)
chr4 (85-137)||(38536506-38536558)
chr4 (85-133)||(42497719-42497767)
chr4 (85-137)||(48318844-48318896)
chr4 (1-37)||(49397263-49397299)
chr4 (85-136)||(372256-372307)
chr4 (62-137)||(29822892-29822967)
chr4 (62-133)||(54631276-54631347)
chr4 (75-137)||(4936502-4936564)
chr4 (85-131)||(27741899-27741945)
chr4 (107-137)||(30060051-30060081)
chr4 (1-34)||(2505914-2505947)
chr4 (1-34)||(6003556-6003589)
chr4 (92-137)||(23524129-23524174)
chr4 (1-38)||(25752322-25752359)
chr4 (62-131)||(32442122-32442191)
chr4 (8-37)||(34973122-34973151)
chr4 (1-38)||(41412977-41413014)
chr4 (1-38)||(46440151-46440188)
chr4 (1-38)||(47456851-47456888)
chr4 (74-119)||(52089578-52089623)
chr4 (85-137)||(5803208-5803260)
chr4 (1-37)||(6228693-6228729)
chr4 (85-137)||(40703999-40704051)
chr4 (75-131)||(49001341-49001397)
chr4 (8-36)||(53893906-53893934)
chr4 (1-37)||(55052498-55052534)
[»] chr6 (19 HSPs)
chr6 (75-137)||(3717062-3717124)
chr6 (62-137)||(4508082-4508157)
chr6 (62-129)||(5639165-5639232)
chr6 (75-137)||(21514811-21514873)
chr6 (1-38)||(33413365-33413402)
chr6 (62-137)||(2539755-2539830)
chr6 (1-38)||(2813103-2813140)
chr6 (85-133)||(237125-237173)
chr6 (85-137)||(2813002-2813054)
chr6 (85-133)||(5699925-5699973)
chr6 (85-133)||(9905390-9905438)
chr6 (97-140)||(7413106-7413149)
chr6 (62-137)||(17264713-17264788)
chr6 (1-35)||(9905358-9905392)
chr6 (75-137)||(29630744-29630806)
chr6 (85-134)||(1945365-1945414)
chr6 (1-38)||(5699809-5699846)
chr6 (1-38)||(21514910-21514947)
chr6 (85-129)||(14587349-14587393)
[»] chr3 (35 HSPs)
chr3 (75-137)||(51258721-51258783)
chr3 (64-137)||(47302325-47302398)
chr3 (62-137)||(34821123-34821198)
chr3 (75-137)||(28873323-28873385)
chr3 (1-38)||(52777474-52777511)
chr3 (62-137)||(2358402-2358477)
chr3 (62-137)||(35142377-35142452)
chr3 (62-133)||(50716557-50716628)
chr3 (62-133)||(50796219-50796290)
chr3 (62-124)||(43472761-43472823)
chr3 (83-137)||(46622575-46622629)
chr3 (1-38)||(3938425-3938462)
chr3 (1-38)||(28873249-28873286)
chr3 (88-137)||(29048660-29048709)
chr3 (1-38)||(43472848-43472885)
chr3 (1-38)||(50716496-50716533)
chr3 (1-38)||(50796314-50796351)
chr3 (76-133)||(51259119-51259176)
chr3 (1-37)||(35142317-35142353)
chr3 (85-137)||(51816541-51816593)
chr3 (74-133)||(500970-501029)
chr3 (78-137)||(29036124-29036183)
chr3 (74-137)||(47739714-47739776)
chr3 (83-137)||(3902586-3902640)
chr3 (96-142)||(30721609-30721655)
chr3 (5-38)||(2358501-2358534)
chr3 (1-38)||(34821222-34821259)
chr3 (1-34)||(47123269-47123302)
chr3 (1-34)||(47130635-47130668)
chr3 (1-34)||(47302261-47302294)
chr3 (1-38)||(47739812-47739849)
chr3 (1-38)||(49096105-49096142)
chr3 (1-37)||(3351946-3351982)
chr3 (85-137)||(3938509-3938561)
chr3 (1-37)||(30721690-30721726)
[»] scaffold0018 (1 HSPs)
scaffold0018 (62-137)||(174141-174216)
[»] scaffold0182 (1 HSPs)
scaffold0182 (85-137)||(23300-23352)
[»] scaffold0137 (1 HSPs)
scaffold0137 (85-137)||(9278-9330)
[»] scaffold0508 (1 HSPs)
scaffold0508 (1-38)||(3273-3310)
[»] scaffold0010 (1 HSPs)
scaffold0010 (62-132)||(140790-140860)


Alignment Details
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 18583460 - 18583324
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccccnnnnnnnnnnnnnnnnttcaaacaccatgactcatatagaagagatttcttacgggactccg 100  Q
    ||||||||||||||||||||||||||||||||||||||                |||||  |||| |||||  |||||||||| ||||||||||||||||    
T  18583460 tttcgggctacttgatcggattgctctgaaacttccccaaaaaatcagaacaaattcaaggaccacgactcccatagaagagacttcttacgggactccg 18583361  T
Q  101 ccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||| ||||| ||||||| |||||||||||||||||    
T  18583360 cccctcaaaatccaaaattccattgtttagacccatt 18583324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 27795136 - 27795206
Alignment:
Q  64 catgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagaccc 134  Q
    |||||||| | ||||||||| ||||||| ||||||||||||| ||||| ||||||||||| ||||||||||    
T  27795136 catgactcttgtagaagagacttcttacaggactccgcccctcaaaatccaaaatttcatcgtttagaccc 27795206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 41584424 - 41584361
Alignment:
Q  74 atagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||| || ||||||||||||||||||||| |||||  |||||| |||||||||||||||||    
T  41584424 atagaagggacttcttacgggactccgcccctcaaaatctaaaattccattgtttagacccatt 41584361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 41584520 - 41584445
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  ||||||| || ||||||||||||||||||||| | |||  |||||| |||||||||||||||||    
T  41584520 accatgactcccatagaagggacttcttacgggactccgcccctcacaatctaaaattccattgtttagacccatt 41584445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33611326 - 33611289
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33611326 tttcgggctacttgatcggattgctctgaaacttcccc 33611289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 28866458 - 28866410
Alignment:
Q  89 tacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  28866458 tacgggactccgcccctcaaaatccaaaatttcatcgtttagacccatt 28866410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 38885540 - 38885592
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| |||||||||||||| ||||||||||||| ||| |||||||||||||    
T  38885540 ttcttatgggactccgcccctcaaaattcaaaattccatcgtttagacccatt 38885592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 49677790 - 49677842
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||||| ||||    
T  49677790 ttcttacgggactccgcccctcaaaattcaaaattccatcgtttagactcatt 49677842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 9446030 - 9445972
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagaccc 134  Q
    |||||| ||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||    
T  9446030 tagaagggatttcttacgggactccg-ccctcaaaatccaaaatttcatcgtttagaccc 9445972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 24472671 - 24472608
Alignment:
Q  74 atagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||| || ||||| ||||||||||||| | ||||| ||||||||||| |||||||||||||    
T  24472671 atagaagggacttcttgcgggactccgcccttcaaaatccaaaatttcatcgtttagacccatt 24472608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 44572955 - 44572885
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagac 132  Q
    ||||||||||  |||||||||| |||||| |||||||||||| | |||||||||||||  || ||||||||    
T  44572955 accatgactcccatagaagagacttcttaggggactccgcccatcaaaattcaaaattctatcgtttagac 44572885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6223667 - 6223634
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaactt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6223667 tttcgggctacttgatcggattgctctgaaactt 6223634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23442981 - 23443018
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  23442981 tttcggactacttgatcggattgctctgaaacttcccc 23443018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34006504 - 34006541
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34006504 tttcgggctacttgatcggattgctccgaaacttcccc 34006541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 40907787 - 40907714
Alignment:
Q  64 catgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||  ||| ||| || |||||| |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  40907787 catgactctcataaaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 40907714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42546211 - 42546248
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42546211 tttcgggctacttgatcggattgctccgaaacttcccc 42546248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49786511 - 49786548
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  49786511 tttcggcctacttgatcggattgctctgaaacttcccc 49786548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 33611242 - 33611190
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||| || |||| ||||| ||||||| |||||||||||||||||    
T  33611242 ttcttacgggactacgtccctcaaaatccaaaattccattgtttagacccatt 33611190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40650591 - 40650556
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcc 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  40650591 tttcgggctacttgatcggattgctccgaaacttcc 40650556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 44938114 - 44938079
Alignment:
Q  102 cccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||| |||||||||||||||||||||||||||||||    
T  44938114 ccctcaaaattcaaaatttcattgtttagacccatt 44938079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 49786572 - 49786647
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   ||||||||| |||||| | |||||||||||| ||||| ||||||| ||||||| | |||||||    
T  49786572 accatgactcccgtagaagagacttcttatgagactccgcccctcaaaatccaaaattccattgttcaaacccatt 49786647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 52744698 - 52744627
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    ||||||||||  ||||||| || |||||||  |||||| || || ||||||||||||||||| |||||||||    
T  52744698 accatgactctcatagaagggacttcttacaagactccacctctcaaaattcaaaatttcatcgtttagacc 52744627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7011453 - 7011490
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  7011453 tttcgggctacttgatcggattgctccgaaacatcccc 7011490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17000622 - 17000659
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  17000622 tttcgggctacttgattggattgctccgaaacttcccc 17000659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28866546 - 28866509
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  28866546 tttcggactacttgatcggattgctccgaaacttcccc 28866509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38885456 - 38885489
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaactt 34  Q
    |||||||||||||||||||||||||| |||||||    
T  38885456 tttcgggctacttgatcggattgctccgaaactt 38885489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 40650529 - 40650484
Alignment:
Q  92 gggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  40650529 gggactccgcccctcaaaatccaaaattccatcgtttagacccatt 40650484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40907850 - 40907813
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  40907850 tttcggactacttgatcggattgctccgaaacttcccc 40907813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41584581 - 41584544
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| ||||||| |||    
T  41584581 tttcgggctacttgatcggattgctccgaaacttgccc 41584544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45046766 - 45046733
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaactt 34  Q
    |||||||||||||||||||||||||| |||||||    
T  45046766 tttcgggctacttgatcggattgctccgaaactt 45046733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45567806 - 45567769
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  45567806 tttcggactacttgatcggattgctccgaaacttcccc 45567769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52744759 - 52744722
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  52744759 tttcggactacttgatcggattgctccgaaacttcccc 52744722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 34006578 - 34006626
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcat 123  Q
    |||||| || |||||||||||||||| |||| ||||| |||||||||||    
T  34006578 tagaagggacttcttacgggactccgtccctcaaaatccaaaatttcat 34006626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 42546295 - 42546346
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||| | ||||| ||||||| ||| |||||||||||||    
T  42546295 ttcttacgggactccgccc-tcaaaatccaaaattccatcgtttagacccatt 42546346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 45046705 - 45046625
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccattattta 142  Q
    ||||||||||   |||||| || |||||| | |||||||||||| ||||| ||||||| ||| ||||||| ||||| ||||    
T  45046705 accatgactcccttagaagggacttcttatgagactccgcccctcaaaatccaaaattccatcgtttagatccatttttta 45046625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 38065425 - 38065352
Alignment:
Q  64 catgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||||| | ||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  38065425 catgactcctgtagaagagacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacccatt 38065352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 15994946 - 15994894
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  15994946 ttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacccatt 15994894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 17474648 - 17474573
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   ||||||| | ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  17474648 accatgactcccttagaagaaacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 17474573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 25217624 - 25217549
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  ||||||| || ||||||||||||||||||||| ||||| |||||||  || |||||||||||||    
T  25217624 accatgactcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattctatcgtttagacccatt 25217549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 27670800 - 27670875
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   |||||||||  ||||| |||||||||||||| ||||||||||||| ||| |||||||||||||    
T  27670800 accatgactcccttagaagagacctcttatgggactccgcccctcaaaattcaaaattccatcgtttagacccatt 27670875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 33452292 - 33452217
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  ||| ||| || ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  33452292 accatgactcccataaaagcgacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 33452217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 17133042 - 17133104
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||| || ||||||||||||| |||| ||||| ||||||||||| |||||||||||||    
T  17133042 tagaagagactttttacgggactccgaccctcaaaatccaaaatttcatcgtttagacccatt 17133104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 30763966 - 30764028
Alignment:
Q  74 atagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccat 136  Q
    ||||||| || ||||||||||||||||||||| ||||| ||||||||||| || |||||||||    
T  30763966 atagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtctagacccat 30764028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 42894704 - 42894756
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  42894704 ttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 42894756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 33440355 - 33440280
Alignment:
Q  67 gactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccattattta 142  Q
    ||||| |||| ||| || |||||||||||||||||| || ||||||||||||| ||| ||||||| ||||| ||||    
T  33440355 gactcctataaaagggacttcttacgggactccgcctctcaaaattcaaaattccatcgtttagatccatttttta 33440280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 42604850 - 42604803
Alignment:
Q  88 ttacgggactccgccccttaaaattcaaaatttcattgtttagaccca 135  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  42604850 ttacgggacttcgccccttaaaatccaaaatttcatcgtttagaccca 42604803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 44465590 - 44465515
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   |||||| || ||||||||||||||||||||| ||||| ||||||| |||  ||||||||||||    
T  44465590 accatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcttttagacccatt 44465515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 35251269 - 35251311
Alignment:
Q  95 actccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  35251269 actccgccccttaaaatccaaaatttcatcgtttagacccatt 35251311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 39447474 - 39447532
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    |||||| || ||||||||||||||||||||| ||||| ||||||| ||| |||||||||    
T  39447474 tagaagggacttcttacgggactccgcccctcaaaatccaaaattacatcgtttagacc 39447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 41203026 - 41202964
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||| | ||||| ||||||||||| | ||||| ||||||||||| |||||||||||||    
T  41203026 tagaagagactccttacaggactccgcccatcaaaatccaaaatttcatcgtttagacccatt 41202964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38308743 - 38308706
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  38308743 tttcgggctacttgatcagattgctctgaaacttcccc 38308706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 41854811 - 41854778
Alignment:
Q  5 gggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||||||||||||||||||||    
T  41854811 gggctacttgatcggattgctctgaaacttcccc 41854778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42478986 - 42479023
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  42478986 tttcgggctacttgatcagattgctctgaaacttcccc 42479023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 32187711 - 32187659
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||| ||||| ||||| ||||||| ||| |||||||||||||    
T  32187711 ttcttacgggactccacccctcaaaatccaaaattccatcgtttagacccatt 32187659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41510340 - 41510304
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccc 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  41510340 tttcgggctacttgatcggattgctccgaaacttccc 41510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 41854730 - 41854678
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  41854730 ttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 41854678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 18204922 - 18204871
Alignment:
Q  82 gatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    |||||||||||| |||| |||||| |||||| ||||||||||| ||||||||    
T  18204922 gatttcttacggaactctgcccctcaaaatttaaaatttcattatttagacc 18204871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5507662 - 5507699
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  5507662 tttcgggcaacttgatcggattgctccgaaacttcccc 5507699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 5507726 - 5507799
Alignment:
Q  64 catgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||  |||||||| | |||||| || ||||||||||| ||||| ||||||| ||| |||||||| ||||    
T  5507726 catgactcccatagaagaaacttcttatggaactccgcccctcaaaatccaaaattccatcgtttagactcatt 5507799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13704723 - 13704690
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaactt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  13704723 tttcgggctacttgatcagattgctctgaaactt 13704690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32187780 - 32187743
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  32187780 tttcggactacttgatcggattgctccgaaacttcccc 32187743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 34517409 - 34517478
Alignment:
Q  64 catgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    ||||||||  ||||||| || ||||||||||| ||||| ||| ||||| ||||||| ||| |||||||||    
T  34517409 catgactcccatagaagggacttcttacgggattccgcacctcaaaatccaaaattccatcgtttagacc 34517478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 38308651 - 38308610
Alignment:
Q  93 ggactccgccccttaaaattcaaaatttcattgtttagaccc 134  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  38308651 ggactccgcccctcaaaatccaaaattccattgtttagaccc 38308610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41203097 - 41203060
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  41203097 tttcgggcaacttgatcggattgctccgaaacttcccc 41203060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 41510256 - 41510207
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagaccc 134  Q
    |||||| |||||||| ||||| ||||| ||||||||||| ||||||||||    
T  41510256 ttcttatgggactccacccctcaaaatccaaaatttcatcgtttagaccc 41510207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 16750263 - 16750219
Alignment:
Q  93 ggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  16750263 ggactccgcccctcaaaatccaaaattccatcgtttagacccatt 16750219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 34817345 - 34817377
Alignment:
Q  2 ttcgggctacttgatcggattgctctgaaactt 34  Q
    |||||||||||||||| ||||||||||||||||    
T  34817345 ttcgggctacttgatctgattgctctgaaactt 34817377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 3304606 - 3304526
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccattattta 142  Q
    |||||||||| | |||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||    
T  3304606 accatgactcctctagaagggacttcttacgggactccgcccctcaaaatccaaaatttcattgtttagacctatttttta 3304526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 33573900 - 33573828
Alignment:
Q  65 atgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||| || ||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  33573900 atgactcctaaagaagggacttcttacgggactccgcccctcaaaatccaaaatttcattgtttagacccatt 33573828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 37518118 - 37518043
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  |||||||||| ||||||| ||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  37518118 accatgactcccatagaagagacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacccatt 37518043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 47202791 - 47202866
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  ||||||| || |||||| |||||||||||||| ||||| ||||||| |||||||||||||||||    
T  47202791 accatgactcccatagaagggacttcttaagggactccgcccctcaaaatccaaaattccattgtttagacccatt 47202866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 8155226 - 8155278
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  8155226 ttcttacgggactccgcccctcaaaatccaaaattccattgtttagacccatt 8155278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 36468371 - 36468319
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||||||||    
T  36468371 ttcttacgggactccgcccctcaagattcaaaatttcatcgtttagacccatt 36468319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 9152095 - 9152170
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   |||||| || ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  9152095 accatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 9152170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 7115111 - 7115044
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccattattta 142  Q
    |||||| || |||||||||||||||  |||| ||||| ||||||| ||||||||||||||||| ||||    
T  7115111 tagaagggacttcttacgggactccttccctcaaaatccaaaattccattgtttagacccatttttta 7115044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 42925495 - 42925420
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   |||||| || |||||| |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  42925495 accatgactcccttagaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 42925420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 3304672 - 3304638
Alignment:
Q  3 tcgggctacttgatcggattgctctgaaacttccc 37  Q
    |||||||||||||||||||||||||||||||||||    
T  3304672 tcgggctacttgatcggattgctctgaaacttccc 3304638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 6466969 - 6466912
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccattattta 142  Q
    |||||| |||||||||||||| |||||  |||||||||| ||||||||||||| ||||    
T  6466969 ttcttatgggactccgcccctcaaaatctaaaatttcatcgtttagacccatttttta 6466912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26555073 - 26555040
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaactt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  26555073 tttcgggctacttgatcggattgctctgaaactt 26555040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36468453 - 36468416
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  36468453 tttcgggctacttgatcggattgctccgaaacttcccc 36468416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36629446 - 36629483
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  36629446 tttcgggctacttgatcggattgctccgaaacttcccc 36629483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 24042029 - 24041977
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||| ||||| | ||| |||||||||||||    
T  24042029 ttcttacgggactccgcccctcaaaatccaaaactccatcgtttagacccatt 24041977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7115186 - 7115151
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcc 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  7115186 tttcgggctacttgatcgtattgctctgaaacttcc 7115151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 16278330 - 16278389
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagaccc 134  Q
    |||||| || ||||||||||||||||| | | ||||| ||||||||||| ||||||||||    
T  16278330 tagaagggacttcttacgggactccgcacatcaaaatccaaaatttcatcgtttagaccc 16278389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31643283 - 31643318
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcc 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  31643283 tttcggactacttgatcggattgctctgaaacttcc 31643318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 42864940 - 42864881
Alignment:
Q  78 aagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| |||||| |||||||||||||| ||||| |||||||  || |||||||||||||    
T  42864940 aagagacttcttatgggactccgcccctcaaaatccaaaattcaatcgtttagacccatt 42864881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 43186102 - 43186157
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttag 130  Q
    |||||| || ||||||||||||||||||||| ||||| ||||||| ||| ||||||    
T  43186102 tagaagggacttcttacgggactccgcccctaaaaatccaaaattccatcgtttag 43186157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24690249 - 24690215
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttc 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  24690249 tttcgggctacttgatcggattgctccgaaacttc 24690215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 30861400 - 30861462
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| || ||||||| ||| ||| |||||  |||||||||||||||| |||||||||||||    
T  30861400 tagaagggacttcttacaggattcctcccctcgaaattcaaaatttcatcgtttagacccatt 30861462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 33573952 - 33573922
Alignment:
Q  8 ctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||||||||    
T  33573952 ctacttgatcggattgctctgaaacttcccc 33573922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 48705841 - 48705779
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| || ||||||  ||||||||||||| ||| | ||||||||||| |||||||||||||    
T  48705841 tagaagggacttcttataggactccgcccctcaaattccaaaatttcatcgtttagacccatt 48705779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 19225451 - 19225378
Alignment:
Q  64 catgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||  |||||||  | ||||||| ||||||||||||| ||||| ||||||| ||| ||||||| |||||    
T  19225451 catgactcccatagaaggaacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagatccatt 19225378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 31985370 - 31985297
Alignment:
Q  64 catgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||  ||||||| |||||||||| |||||| |||||| ||| | |||||||  || |||||||||||||    
T  31985370 catgactctcatagaagggatttcttacaggactctgcccctcaaactccaaaattcaatcgtttagacccatt 31985297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42865018 - 42864981
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  42865018 tttcggactacttgatcggattgctctgaaacatcccc 42864981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42925556 - 42925519
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| ||||||| |||    
T  42925556 tttcgggctacttgatcggattgctccgaaacttaccc 42925519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47202730 - 47202767
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  47202730 tttcgggctacttgattggattgctcttaaacttcccc 47202767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16983649 - 16983613
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccc 37  Q
    |||| |||||||||||| |||||||||||||||||||    
T  16983649 tttcaggctacttgatcagattgctctgaaacttccc 16983613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 26554995 - 26554943
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| ||||||| |||||| ||||| ||||||| ||| |||||||||||||    
T  26554995 ttcttatgggactctgcccctcaaaatccaaaattccatcgtttagacccatt 26554943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 31643367 - 31643419
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| |||||||| ||||| ||||| ||||||| |||| ||||||||||||    
T  31643367 ttcttatgggactccacccctcaaaatccaaaattccattatttagacccatt 31643419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 33472294 - 33472353
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagaccc 134  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  33472294 tagaagagacttcttacgggactacgcccctcaaaattcaaaatttcatcgtttagaccc 33472353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 11698171 - 11698096
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  ||||||| ||  |||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  11698171 accatgactcccatagaagggacgtcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 11698096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31519808 - 31519771
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31519808 tttcgggctacttgatcggattgctctgaaacttcccc 31519771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 42280733 - 42280666
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccattattta 142  Q
    |||||| || ||||||| ||||||||||||| ||||| ||||||| ||| ||||||||||||| ||||    
T  42280733 tagaagggacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacccatttttta 42280666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 27927782 - 27927730
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||| |||||  |||| ||||||||||| |||||||||||||    
T  27927782 ttcttacgggactccacccctccaaatccaaaatttcatcgtttagacccatt 27927730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 28917102 - 28917154
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| |||||||||||||| ||||| ||||||| |||||||||||| ||||    
T  28917102 ttcttatgggactccgcccctcaaaatccaaaattccattgtttagactcatt 28917154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 3094989 - 3095064
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  |||| || || | |||||| |||||| ||||| ||||| ||||||||||| |||||||||||||    
T  3094989 accatgactcccataggagggactacttacgcgactccacccctcaaaatccaaaatttcatcgtttagacccatt 3095064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 8885307 - 8885232
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   |||||| || ||||||| ||||||||||||| ||||| ||||||| |||  ||||||||||||    
T  8885307 accatgactcccgtagaagggacttcttacaggactccgcccctcaaaatccaaaattccatcatttagacccatt 8885232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36980812 - 36980847
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcc 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  36980812 tttcgggctacttgatcggattgctccgaaacttcc 36980847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 36980886 - 36980948
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| || ||||||| ||||||||| ||| ||||||||||||  ||| |||||||||||||    
T  36980886 tagaagggacttcttacaggactccgctcctcaaaattcaaaatcccatcgtttagacccatt 36980948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 40994987 - 40995049
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| ||||| ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||    
T  40994987 tagaagggatttattacgggactccgcctctcaaaatccaaaattccatcgtttagacacatt 40995049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6395327 - 6395364
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  6395327 tttcgggctacttgatcggattgttctgaaacatcccc 6395364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11698232 - 11698195
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  11698232 tttcgggctacttgatcggaatgctccgaaacttcccc 11698195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 36165749 - 36165716
Alignment:
Q  5 gggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||| |||||||||||    
T  36165749 gggctacttgatcggattgctccgaaacttcccc 36165716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44106466 - 44106503
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  44106466 tttcgtgctacttgatctgattgctctgaaacttcccc 44106503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 4259514 - 4259462
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||| |||||||  ||  ||||||||||||    
T  4259514 ttcttacgggactccgcccctcaaaatccaaaattctatcctttagacccatt 4259462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 10840585 - 10840533
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||| ||||| ||||||||||||  |||  ||||||||||||    
T  10840585 ttcttacgggactccacccctcaaaattcaaaatcccatcttttagacccatt 10840533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 31519723 - 31519674
Alignment:
Q  86 tcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||  |||| ||||| ||||||| |||||||||||||||||    
T  31519723 tcttacgggactcc--ccctcaaaatccaaaattccattgtttagacccatt 31519674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 41530899 - 41530954
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttaga 131  Q
    ||||||||| |||||||||||||||| |||| ||||| ||||||| |||| ||||||    
T  41530899 tagaagagacttcttacgggactccg-ccctcaaaatccaaaattgcattatttaga 41530954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 7884460 - 7884535
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   ||||||||| ||||||||| ||||||||||| |||||  ||||||||||||||||||||||||    
T  7884460 accatgactcccgtagaagagacttcttacggaactccgcccctcaaaatctaaaatttcattgtttagacccatt 7884535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 14112143 - 14112206
Alignment:
Q  74 atagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||| || ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  14112143 atagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 14112206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 16429258 - 16429317
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagaccc 134  Q
    |||||| || ||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  16429258 tagaagggacttcttacgggactccgcccctcaaaattcaaaattttatcgtttagaccc 16429317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 26898658 - 26898583
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||||||| | |||||| || ||||||| ||||||||||||| ||||| ||||||||||| |||||||| ||||    
T  26898658 accatgactcctgtagaagggacttcttacaggactccgcccctcaaaatccaaaatttcatcgtttagactcatt 26898583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 6157020 - 6157077
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccattattta 142  Q
    ||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||| ||||    
T  6157020 ttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatttttta 6157077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 26190154 - 26190102
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| |||||||||||||| ||||| ||||||| |||||||||||||||||    
T  26190154 ttcttaagggactccgcccctcaaaatccaaaattccattgtttagacccatt 26190102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 31929041 - 31928905
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccccnnnnnnnnnnnnnnnnttcaaacaccatgactcatatagaagagatttcttacgggactccg 100  Q
    |||||||||||||||||||||||||| |||||||||||                |||||  ||||||||||   |||||| || ||||| ||||||||||    
T  31929041 tttcgggctacttgatcggattgctccgaaacttccccagaaaatcagaaaaaattcaaggaccatgactcccttagaagggacttcttgcgggactccg 31928942  T
Q  101 ccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||| | ||||| ||||||||||| |||||||||||||    
T  31928941 cccttcaaaatccaaaatttcatcgtttagacccatt 31928905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 12464973 - 12464902
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    |||||||||| ||||||||  | |||||||||||||| |||||| ||||| ||||||| |||| ||||||||    
T  12464973 accatgactcctatagaaggaacttcttacgggactctgcccctcaaaatccaaaattccattatttagacc 12464902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 27212982 - 27213041
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagaccc 134  Q
    |||||| || ||||||||||||||||||||| |||||  |||||| ||||||||||||||    
T  27212982 tagaagggacttcttacgggactccgcccctcaaaatctaaaattccattgtttagaccc 27213041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 31221182 - 31221123
Alignment:
Q  74 atagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    ||||||| || |||||||| |||||||||||| ||||| ||||||||||| |||||||||    
T  31221182 atagaagggacttcttacgagactccgcccctcaaaatccaaaatttcatcgtttagacc 31221123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 5456335 - 5456389
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgttta 129  Q
    |||||| ||||||||||||||||||||| || ||||| ||||||||||| |||||    
T  5456335 tagaagggatttcttacgggactccgcctctcaaaatccaaaatttcatcgttta 5456389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 26622397 - 26622459
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||| |||| |||||| | |||||||||||| |||||||||||||| || |||||||||||||    
T  26622397 tagatgagacttcttatgagactccgcccctcaaaattcaaaattttatcgtttagacccatt 26622459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 32841813 - 32841751
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| || |||||| |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  32841813 tagaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 32841751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7884398 - 7884435
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  7884398 tttcgggctacttgatcggattgctccgaaacttcccc 7884435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31221255 - 31221218
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  31221255 tttcgggctacttgatcggattgctccgaaacttcccc 31221218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 40619817 - 40619765
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||| ||||||| |||  ||||||||||||    
T  40619817 ttcttacgggactccgcccctcaaaatccaaaattccatcatttagacccatt 40619765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 37183612 - 37183561
Alignment:
Q  86 tcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||||||||||||||||| ||||| ||||||| |||  ||||||||||||    
T  37183612 tcttacgggactccgcccctcaaaatccaaaattccatcatttagacccatt 37183561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4064635 - 4064598
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  4064635 tttcgggctacttgattggattgctccgaaacttcccc 4064598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15957954 - 15957991
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  15957954 tttcggactacttgatcggattgctccgaaacttcccc 15957991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20891818 - 20891855
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  20891818 tttcaggctacttgatcggattgctccgaaacttcccc 20891855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23269542 - 23269579
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  23269542 tttcgggctacttgatcggattgcttcgaaacttcccc 23269579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26190238 - 26190201
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  26190238 tttcggactactagatcggattgctctgaaacttcccc 26190201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26898719 - 26898682
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| ||||||| |||    
T  26898719 tttcgggctacttgatcggattgctccgaaacttgccc 26898682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38372506 - 38372543
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  38372506 tttcgggctacttgatcggatcgctccgaaacttcccc 38372543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 6800765 - 6800725
Alignment:
Q  92 gggactccgccccttaaaattcaaaatttcattgtttagac 132  Q
    |||||||||||||| ||||| ||||||||||| ||||||||    
T  6800765 gggactccgcccctcaaaatccaaaatttcatcgtttagac 6800725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 11186019 - 11185967
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||  ||||||||||| |||||||||||||  || |||||||||||||    
T  11186019 ttcttacgatactccgcccctcaaaattcaaaattcaatcgtttagacccatt 11185967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24203600 - 24203564
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccc 37  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  24203600 tttcgggctatttgatcggattgctccgaaacttccc 24203564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 26093748 - 26093800
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||| ||||| ||||| ||||||| |||  ||||||||||||    
T  26093748 ttcttacgggactcctcccctcaaaatccaaaattccatcatttagacccatt 26093800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32841886 - 32841850
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccc 37  Q
    |||||||||||||||||||||||||| |||| |||||    
T  32841886 tttcgggctacttgatcggattgctccgaaaattccc 32841850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 38372580 - 38372624
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatt 119  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||    
T  38372580 tagaagagacttcttacgggactccacccctcaaaatccaaaatt 38372624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 38692614 - 38692562
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||| |||||||  || |||||||| ||||    
T  38692614 ttcttacgggactccgcccctcaaaatccaaaattctatcgtttagacacatt 38692562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 25752298 - 25752223
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   ||||||||| ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  25752298 accatgactcccttagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 25752223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 19835855 - 19835907
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  19835855 ttcttacgggactccgcccctcaaaatccaaaattccattgtttagacccatt 19835907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 46440127 - 46440052
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  | ||||| || ||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||    
T  46440127 accatgactcccaaagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacacatt 46440052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32442061 - 32442098
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32442061 tttcgggctacttgatcggattgctctgaaacttcccc 32442098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 7931968 - 7932048
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccattattta 142  Q
    ||||||||||   |||||| || ||||||||||||||||||||| ||||| ||||||| ||| |||||||| |||| ||||    
T  7931968 accatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacacatttttta 7932048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 14474047 - 14473995
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| || || ||||||||||| |||||||||||||    
T  14474047 ttcttacgggactccgcccctcaagatccaaaatttcatcgtttagacccatt 14473995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 34973199 - 34973251
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  34973199 ttctttcgggactccgcccctcaaaatccaaaattccattgtttagacccatt 34973251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 38417103 - 38417174
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    |||||||||||  |||||| || ||||||| ||||||||||| | ||||| ||||||||||| |||||||||    
T  38417103 accatgactcacgtagaagggacttcttacaggactccgcccttcaaaatccaaaatttcatcgtttagacc 38417174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 25538820 - 25538758
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||  ||| |||||||| ||||    
T  25538820 tagaagagacttcttacgggactccgcccctcaaaatccaaaataccatcgtttagacacatt 25538758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 53893868 - 53893806
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| || |||||| ||| |||||||||| ||||| ||||||||||| |||||||||||||    
T  53893868 tagaagggacttcttatgggtctccgcccctcaaaatccaaaatttcatcgtttagacccatt 53893806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 49397337 - 49397398
Alignment:
Q  76 agaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| | |||||| |||| || |||||| ||||| |||||||||||||||||||||||||    
T  49397337 agaagaaacttcttatgggattcggcccctcaaaatccaaaatttcattgtttagacccatt 49397398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 6003505 - 6003457
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    ||||||||||||||||||||| ||||| |||||||  ||||||||||||    
T  6003505 ttcttacgggactccgcccctcaaaatccaaaattctattgtttagacc 6003457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 6228645 - 6228593
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||| ||||||| ||||| ||||| ||||||| |||||||||||||||||    
T  6228645 ttcttacaggactcctcccctcaaaatccaaaattccattgtttagacccatt 6228593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 38536506 - 38536558
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  38536506 ttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 38536558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 42497767 - 42497719
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    ||||||| ||||||||||||| |||||  ||||||||||||||||||||    
T  42497767 ttcttacaggactccgcccctcaaaatctaaaatttcattgtttagacc 42497719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 48318896 - 48318844
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||| ||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  48318896 ttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacccatt 48318844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49397263 - 49397299
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccc 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  49397263 tttcgagctacttgatcggattgctctgaaacttccc 49397299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 372256 - 372307
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccat 136  Q
    ||||||||||||||| ||||| |||||||||||| |||| ||||| ||||||    
T  372256 ttcttacgggactcctcccctcaaaattcaaaatatcatcgtttaaacccat 372307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 29822892 - 29822967
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   |||||| || ||| |||||||||| |||||| ||||||||||||| ||| |||||||| ||||    
T  29822892 accatgactcccgtagaagggacttcctacgggactctgcccctcaaaattcaaaattccatcgtttagactcatt 29822967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 54631347 - 54631276
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    ||||||||||  ||||||  || ||||||||||||||||| ||| ||||| ||||||| ||| |||||||||    
T  54631347 accatgactcccatagaaaggacttcttacgggactccgcacctcaaaatacaaaattccatcgtttagacc 54631276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 4936564 - 4936502
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||| | |||||| ||||||||| |||| ||||| |||||||||||  ||||||||||||    
T  4936564 tagaagatacttcttatgggactccgtccctcaaaatccaaaatttcatcttttagacccatt 4936502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 27741945 - 27741899
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttaga 131  Q
    |||||| |||||||||||||| ||||| ||||||| |||||||||||    
T  27741945 ttcttatgggactccgcccctcaaaatccaaaattccattgtttaga 27741899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 30060081 - 30060051
Alignment:
Q  107 aaaattcaaaatttcattgtttagacccatt 137  Q
    |||||||||||||||||||||||||||||||    
T  30060081 aaaattcaaaatttcattgtttagacccatt 30060051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2505947 - 2505914
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaactt 34  Q
    |||||||||||||||||||||||||| |||||||    
T  2505947 tttcgggctacttgatcggattgctccgaaactt 2505914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6003589 - 6003556
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaactt 34  Q
    |||||||||||||||| |||||||||||||||||    
T  6003589 tttcgggctacttgattggattgctctgaaactt 6003556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 23524129 - 23524174
Alignment:
Q  92 gggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| ||||||| ||||| |||||||||||| ||||||||||||    
T  23524129 gggacttcgcccctcaaaatccaaaatttcattatttagacccatt 23524174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25752359 - 25752322
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  25752359 tttcgggctacttgatcagattgctccgaaacttcccc 25752322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 32442122 - 32442191
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttaga 131  Q
    ||||||||||   ||||||||| |||||| |||| | ||||||| |||||  ||||||||||||||||||    
T  32442122 accatgactcccttagaagagacttcttatgggatttcgcccctcaaaataaaaaatttcattgtttaga 32442191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 34973122 - 34973151
Alignment:
Q  8 ctacttgatcggattgctctgaaacttccc 37  Q
    ||||||||||||||||||||||||||||||    
T  34973122 ctacttgatcggattgctctgaaacttccc 34973151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41413014 - 41412977
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  41413014 tttcgggctacttgatcagattgttctgaaacttcccc 41412977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46440188 - 46440151
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  46440188 tttcggactacttgatcggattgctccgaaacttcccc 46440151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47456851 - 47456888
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  47456851 tttcgggctacttgatcagattgctccgaaacttcccc 47456888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 52089578 - 52089623
Alignment:
Q  74 atagaagagatttcttacgggactccgccccttaaaattcaaaatt 119  Q
    ||||||| || ||||||||||||||||||||| ||||| |||||||    
T  52089578 atagaagggacttcttacgggactccgcccctcaaaatccaaaatt 52089623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 5803260 - 5803208
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| |||||||| ||||  ||||||||||||| ||| |||||||||||||    
T  5803260 ttcttatgggactccaccccacaaaattcaaaattccatcgtttagacccatt 5803208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6228729 - 6228693
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccc 37  Q
    |||||||||| |||||||||||||||| |||||||||    
T  6228729 tttcgggctatttgatcggattgctctaaaacttccc 6228693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 40703999 - 40704051
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| |||||  |||||| ||| ||||| |||||||    
T  40703999 ttcttacgggactccgcccctcaaaatctaaaattccatcgtttaaacccatt 40704051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 49001397 - 49001341
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttaga 131  Q
    |||||| || ||||||||||||||||| ||| ||||| ||||||| ||| |||||||    
T  49001397 tagaagggacttcttacgggactccgctcctcaaaatccaaaattacatcgtttaga 49001341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 53893934 - 53893906
Alignment:
Q  8 ctacttgatcggattgctctgaaacttcc 36  Q
    |||||||||||||||||||||||||||||    
T  53893934 ctacttgatcggattgctctgaaacttcc 53893906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 55052534 - 55052498
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccc 37  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  55052534 tttcgggctacttgattggattgctccgaaacttccc 55052498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 3717124 - 3717062
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||| || ||||||||||||||    
T  3717124 tagaagagacttcttacgggactccgcccctcaaaatccaaaattccactgtttagacccatt 3717062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 4508157 - 4508082
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  | |||||||| |||||| |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  4508157 accatgactcccacagaagagacttcttaagggactccgcccctcaaaatccaaaattccatcgtttagacccatt 4508082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 5639165 - 5639232
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgttta 129  Q
    |||||||||| | ||||||||| ||||||||||||||||||||| ||||| ||||||| ||| |||||    
T  5639165 accatgactcctttagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgttta 5639232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 21514873 - 21514811
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| || ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  21514873 tagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 21514811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33413402 - 33413365
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33413402 tttcgggctacttgatcggattgctctgaaacttcccc 33413365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 2539755 - 2539830
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  ||||||| || ||||||||||||||||||||| ||||| |||||||  || |||||||| ||||    
T  2539755 accatgactctcatagaagtgacttcttacgggactccgcccctcaaaatccaaaattcaatcgtttagactcatt 2539830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2813140 - 2813103
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  2813140 tttcgggctacttgatcggattgctccgaaacttcccc 2813103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 237125 - 237173
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||||||||    
T  237125 ttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 237173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 2813054 - 2813002
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| |||||||| ||||| ||||| ||||||||||| |||||||||||||    
T  2813054 ttcttatgggactccacccctcaaaatccaaaatttcatcgtttagacccatt 2813002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 5699925 - 5699973
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||||||||    
T  5699925 ttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 5699973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 9905390 - 9905438
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||||||||    
T  9905390 ttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 9905438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 7413106 - 7413149
Alignment:
Q  97 tccgccccttaaaattcaaaatttcattgtttagacccattatt 140  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||||    
T  7413106 tccgcccctcaaaatccaaaatttcatcgtttagacccattatt 7413149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 17264713 - 17264788
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   |||||| || ||||||||||||| || |||| ||||| ||||||||||| ||||||| |||||    
T  17264713 accatgactcccctagaagggacttcttacgggacttcgtccctcaaaatccaaaatttcatcgtttagatccatt 17264788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9905358 - 9905392
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttc 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  9905358 tttcgggctacttgatcggattgctccgaaacttc 9905392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 29630806 - 29630744
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||| |||||| ||||| | |||||| ||||| ||||||||||| |||||||| ||||    
T  29630806 tagaagagacttcttatgggaccctgcccctcaaaatccaaaatttcatcgtttagactcatt 29630744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 1945414 - 1945365
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagaccc 134  Q
    ||||||||||||||||||||| ||||| ||||||| ||  ||||||||||    
T  1945414 ttcttacgggactccgcccctcaaaatccaaaattccaacgtttagaccc 1945365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5699809 - 5699846
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  5699809 tttcggactacttgatcggattgctccgaaacttcccc 5699846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21514947 - 21514910
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  21514947 tttcggactacttgatcggattgctccgaaacttcccc 21514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 14587393 - 14587349
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgttta 129  Q
    |||||||||||||||||| || ||||| ||||||| |||||||||    
T  14587393 ttcttacgggactccgccactcaaaatccaaaattccattgttta 14587349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 51258721 - 51258783
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| || ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  51258721 tagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacccatt 51258783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 47302325 - 47302398
Alignment:
Q  64 catgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||  ||||||| || |||||||||||||| |||||| ||||| ||||||| |||||||||||||||||    
T  47302325 catgactcccatagaagggacttcttacgggactctgcccctcaaaatccaaaattccattgtttagacccatt 47302398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 34821198 - 34821123
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||  ||||||| || ||||||||||| ||||||||| ||||| ||||||| ||| |||||||||||||    
T  34821198 accatgactctcatagaagggacttcttacgggagtccgcccctcaaaatccaaaattccatcgtttagacccatt 34821123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 28873323 - 28873385
Alignment:
Q  75 tagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||| ||| ||||||| |||||    
T  28873323 tagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagatccatt 28873385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52777474 - 52777511
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52777474 tttcgggctacttgatcggattgctctgaaacttcccc 52777511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 2358477 - 2358402
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   |||||| || ||||||||||||| ||||||| |||||  |||||| |||||||||||||||||    
T  2358477 accatgactcccctagaagggacttcttacgggactacgcccctcaaaatctaaaattccattgtttagacccatt 2358402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 35142377 - 35142452
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||   |||||| || |||||||||| |||||||||| ||||| ||||||| ||| |||||||||||||    
T  35142377 accatgactcccgtagaagggacttcttacggggctccgcccctaaaaatccaaaattccatcgtttagacccatt 35142452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 50716557 - 50716628
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    |||||||||| | ||||||||| ||||||||||| ||||||||| ||||| ||||||| |||  ||||||||    
T  50716557 accatgactcctctagaagagacttcttacgggattccgcccctcaaaatccaaaattccatcctttagacc 50716628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 50796290 - 50796219
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    |||||||||| | ||||||||| ||||||||||| ||||||||| ||||| ||||||| |||  ||||||||    
T  50796290 accatgactcctctagaagagacttcttacgggattccgcccctcaaaatccaaaattccatcctttagacc 50796219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 43472823 - 43472761
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcatt 124  Q
    |||||||||| | |||||| || ||||||||||||||||||||| ||||| ||||||| ||||    
T  43472823 accatgactcctctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatt 43472761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 46622629 - 46622575
Alignment:
Q  83 atttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||||| | ||| ||||||| ||| |||||||||||||    
T  46622629 atttcttacgggactccgcccctcagaatccaaaattccatcgtttagacccatt 46622575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3938425 - 3938462
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  3938425 tttcgggttacttgatcggattgctctgaaacttcccc 3938462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28873249 - 28873286
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  28873249 tttcgggctacttgatcggattgctccgaaacttcccc 28873286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 29048660 - 29048709
Alignment:
Q  88 ttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  29048660 ttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 29048709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43472885 - 43472848
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  43472885 tttcgggctacttgatcggattactctgaaacttcccc 43472848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 50716496 - 50716533
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  50716496 tttcgggctacttgatcggattgctccgaaacttcccc 50716533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50796351 - 50796314
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  50796351 tttcgggctacttgatcggattgctccgaaacttcccc 50796314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 51259176 - 51259119
Alignment:
Q  76 agaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    |||||||| || |||||||| ||||||||| ||||||||||||||| | |||||||||    
T  51259176 agaagagacttgttacgggattccgcccctaaaaattcaaaatttcttcgtttagacc 51259119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35142317 - 35142353
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccc 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35142317 tttcgggctacttgatcggattgctccgaaacttccc 35142353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 51816541 - 51816593
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||||||||||| |||||| |||||||||| |||||| ||||||| |||||    
T  51816541 ttcttacgggactctgcccctcaaaattcaaattttcatcgtttagatccatt 51816593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 501029 - 500970
Alignment:
Q  74 atagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacc 133  Q
    ||||||| || ||||||||| ||||||||||| ||||| ||||||| ||| |||||||||    
T  501029 atagaagggacttcttacggcactccgcccctcaaaatccaaaattccatcgtttagacc 500970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 29036124 - 29036183
Alignment:
Q  78 aagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||| ||| |||||||||| |||||| |||||  |||||||||| |||||||||||||    
T  29036124 aagagacttcctacgggactctgcccctcaaaatctaaaatttcatcgtttagacccatt 29036183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 47739776 - 47739714
Alignment:
Q  74 atagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||||||| |||||  |||||||||||||| ||||||||||| |||  ||||||||||||||    
T  47739776 atagaagagacttctttggggactccgcccctcaaaattcaaaa-ttccgtgtttagacccatt 47739714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 3902640 - 3902586
Alignment:
Q  83 atttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||||| ||||| |||||||  || ||||||| |||||    
T  3902640 atttcttacgggactccgcccctcaaaatccaaaattcaatcgtttagatccatt 3902586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 30721655 - 30721609
Alignment:
Q  96 ctccgccccttaaaattcaaaatttcattgtttagacccattattta 142  Q
    |||||||||| ||||| ||||||||||| ||||||||||||| ||||    
T  30721655 ctccgcccctcaaaatccaaaatttcatcgtttagacccatttttta 30721609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 2358534 - 2358501
Alignment:
Q  5 gggctacttgatcggattgctctgaaacttcccc 38  Q
    |||||||||||||| |||||||||||||||||||    
T  2358534 gggctacttgatcgaattgctctgaaacttcccc 2358501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34821259 - 34821222
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  34821259 tttcaggctacttgatcggatcgctctgaaacttcccc 34821222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 47123269 - 47123302
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaactt 34  Q
    |||||||||||||||||||||||||| |||||||    
T  47123269 tttcgggctacttgatcggattgctccgaaactt 47123302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 47130635 - 47130668
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaactt 34  Q
    |||||||||||||||||||||||||| |||||||    
T  47130635 tttcgggctacttgatcggattgctccgaaactt 47130668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 47302261 - 47302294
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaactt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  47302261 tttcgggctacttgatcggattgttctgaaactt 47302294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47739849 - 47739812
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  47739849 tttcgggctacttgatcggattgctccaaaacttcccc 47739812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49096142 - 49096105
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  49096142 tttcgggctacttgatcggattgctccaaaacttcccc 49096105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3351982 - 3351946
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccc 37  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  3351982 tttcaggctacttgatcggattgctccgaaacttccc 3351946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 3938509 - 3938561
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||||  |||||||||||| |||||   |||||||||||||||||||||||    
T  3938509 ttcttacaagactccgcccctcaaaatcttaaatttcattgtttagacccatt 3938561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30721726 - 30721690
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttccc 37  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  30721726 tttcgagctacttgatcggattgctccgaaacttccc 30721690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 174216 - 174141
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    |||||||||| | |||||| || |||||||| |||||||||||| ||||||||||||| ||| |||||||| ||||    
T  174216 accatgactcctgtagaagggacttcttacgagactccgcccctcaaaattcaaaattccatcgtttagacacatt 174141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 23300 - 23352
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  23300 ttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatt 23352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 9330 - 9278
Alignment:
Q  85 ttcttacgggactccgccccttaaaattcaaaatttcattgtttagacccatt 137  Q
    ||||||||||||||||||||| ||||||||||||  ||| |||||||||||||    
T  9330 ttcttacgggactccgcccctcaaaattcaaaataccatcgtttagacccatt 9278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3310 - 3273
Alignment:
Q  1 tttcgggctacttgatcggattgctctgaaacttcccc 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  3310 tttcgggctacttgatcagattgctctgaaacttcccc 3273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 140790 - 140860
Alignment:
Q  62 accatgactcatatagaagagatttcttacgggactccgccccttaaaattcaaaatttcattgtttagac 132  Q
    ||||||||||  ||| ||| || ||||||||||||| ||||||| ||||| |||| |||||| ||||||||    
T  140790 accatgactcccataaaagggacttcttacgggacttcgcccctcaaaatccaaagtttcatcgtttagac 140860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University