View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3480_high_7 (Length: 313)
Name: NF3480_high_7
Description: NF3480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3480_high_7 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 96050 - 95894
Alignment:
| Q |
12 |
atgaagggtttacagtttgatgacttgactaaaattgaacatgaattcgaaatatctcttgctaaagatcgaatgcgctaggttagtcaaaattatatta |
111 |
Q |
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| T |
96050 |
atgaaggctttacggtttgatgacttgactaaaattgaacatgaattagaaatatctcttgctaaagttcgaaagcgccaggttagtcaaaattatttta |
95951 |
T |
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| Q |
112 |
tctattctatctagtaattagtttatttcttcttcaatattcctgaactttgatcaa |
168 |
Q |
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| T |
95950 |
tctattctatctagtaattagtttatttcttcttcaatattcatgaactttgatcaa |
95894 |
T |
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Target: scaffold0009; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 95834 - 95764
Alignment:
| Q |
228 |
gacacataggaatgaaaatgaaattaacatgatcaaaatgttgaatgtaatcaatatatcaatgaaacata |
298 |
Q |
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| T |
95834 |
gacacataggaatgaaaatgaaattaacttgatcaaaatgttgaatgaaaccaatatatcaatgaaacata |
95764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 14179943 - 14180092
Alignment:
| Q |
20 |
tttacagtttgatgacttgactaaaattgaacatgaattcgaaatatctcttgctaaagatcgaatgcgctaggttagtcaaaattatattatctattct |
119 |
Q |
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| T |
14179943 |
tttacagtttgatgacttgagtaaaattgaacatgaattagagatctctcttgcaaaagttcgaaaccgtcaggttagtcgaaattaatttatctattgt |
14180042 |
T |
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| Q |
120 |
a--tctagtaatt--agtttatttcttcttcaatattcctgaactttgat |
165 |
Q |
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| T |
14180043 |
acctgtagtaattacagtttatttcatcttcaatatttatgaaatttgat |
14180092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 14180195 - 14180260
Alignment:
| Q |
233 |
ataggaatgaaaatgaaattaacatgatcaaaatgttgaatgtaatcaatatatcaatgaaacata |
298 |
Q |
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| T |
14180195 |
ataggaatgaaaatgaaattaacttgttcaaaatgtttaatgaaaacaatatatcaataaaacata |
14180260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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