View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3480_low_1 (Length: 485)
Name: NF3480_low_1
Description: NF3480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3480_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 41552761 - 41552302
Alignment:
| Q |
8 |
tgagatgaactagggcatgagttccgcttccttttgcctggaccttagaaaggagtatttaaggttaaacagaacaactcaacttaataccaaaatgcaa |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41552761 |
tgagataaactagggcatgagttccgcttccttttgcctggaccttagaaaggagtatttaaggttaaacaaaacaactcaacttaataccaaaatgcaa |
41552662 |
T |
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| Q |
108 |
caaaaacataatacaagaagtttctgaaataaaatgtcttcggccaagtccaatcagtcaaagtaatattgtaaacaaaagccgtatatgttgaaaccgc |
207 |
Q |
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| T |
41552661 |
caaaaacataatacaagaagtttctgaaataaaatgtcttcggccaagtccaatcagtcaaagtaatattgtaaacaaaagccgtatatgttgaaaccgc |
41552562 |
T |
|
| Q |
208 |
caattaacatccttatatatcaagcaaatatgtgaagtacaacaaactgaaacaagaaatatctgcttaagataaccataaattggtctcatagattaac |
307 |
Q |
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| T |
41552561 |
caattaacatccttatatatcaagcaaatatgtgaagtacaacaaactgaaacaagaaatatctgcttaagataaccataaattggtctcatagattaac |
41552462 |
T |
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| Q |
308 |
ctgttgtggtgccagttgcaggagacctgtagaagtacaatttctcaaattcgtaaagaagataaccatagagattttcaacttgagcacataaggttgc |
407 |
Q |
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| T |
41552461 |
ctgttgtggtgccagttgcaggagacctgtagaagtacaatttctcaaattcgtaaagaagataaccatagagattttcaacttgagcacataaggttgc |
41552362 |
T |
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| Q |
408 |
attgtttccttccagttttagtgcagaaacaacttcactccatttcttttcttggccaac |
467 |
Q |
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| T |
41552361 |
attgtttccttccagttttagtgcagaaacaacttcactccatttcttttcttggccaac |
41552302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 302 - 461
Target Start/End: Complemental strand, 34255923 - 34255764
Alignment:
| Q |
302 |
attaacctgttgtggtgccagttgcaggagacctgtagaagtacaatttctcaaattcgtaaagaagataaccatagagattttcaacttgagcacataa |
401 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||| ||||||||| ||| ||||| | |||||| ||||||| |||| |||| || |
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| T |
34255923 |
attaacctgtattgctgccagttgcaggagacctgtagaagtacaatgtctcaaatttgtacagaagttctttatagagcttttcaagttgatcacacaa |
34255824 |
T |
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| Q |
402 |
ggttgcattgtttccttccagttttagtgcagaaacaacttcactccatttcttttcttg |
461 |
Q |
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| T |
34255823 |
ggttgcattgtttccttccagttttagtgcagaaacaacttcaccccatttcttttcttg |
34255764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 34256089 - 34255918
Alignment:
| Q |
45 |
ctggaccttagaaaggagtatttaaggttaaacagaaca-actcaacttaataccaaaatgcaacaaaaacataatacaa-gaagtttctgaaataaaat |
142 |
Q |
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|||||||||| |||| || |||||| |||||||| |||| | |||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| |||| |
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| T |
34256089 |
ctggaccttataaagaagaatttaaagttaaacaaaacatattcaacttaatacgaaaatgcaacataaacataatacaatgaagttactgaaatgaaat |
34255990 |
T |
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| Q |
143 |
gtcttcggccaagtccaatcagtcaaagtaatattgtaaacaaaagccgtatatgttgaaaccgccaattaac |
215 |
Q |
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| T |
34255989 |
gtattctgctatgtccaacaagtc-aagcaaaattataaactaaaaccgtatatgtcgaaaccgccaattaac |
34255918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 457
Target Start/End: Complemental strand, 37557159 - 37557019
Alignment:
| Q |
317 |
tgccagttgcaggagacctgtagaagtacaatttctcaaattcgtaaagaagataaccatagagattttcaacttgagcacataaggttgcattgtttcc |
416 |
Q |
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|||| |||| |||| ||||||||||||||||||||||||||| ||| ||||| |||||| ||||| ||||||||| |||| |||||||||| || |
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| T |
37557159 |
tgccggttggaggaaacctgtagaagtacaatttctcaaatttgtatagaagtgttgcatagatcttttcgacttgagcagataacattgcattgttgcc |
37557060 |
T |
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| Q |
417 |
ttccagttttagtgcagaaacaacttcactccatttctttt |
457 |
Q |
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||||| ||| |||||||| ||||||||| ||||||| |||| |
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| T |
37557059 |
ttccaatttcagtgcagagacaacttcagtccatttgtttt |
37557019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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