View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3480_low_11 (Length: 248)
Name: NF3480_low_11
Description: NF3480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3480_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 7322010 - 7321790
Alignment:
| Q |
10 |
gcagagataccaagtccattaagacctggtaaactagtgacaaatgcagtggttaatgtaacattaaaagggtctaatattgtgcttccaggtacaaagc |
109 |
Q |
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||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7322010 |
gcagagaaaccaagtcgattaagacctggtaaactagtaacaaaagcagtggttaatgtaacattaaaagggtctaatattgtgcttccgggtacaaagc |
7321911 |
T |
|
| Q |
110 |
cagagaacacaaaatcatctgctgttacatttgtttctgacttgcatggataaccagaaggggtgtttggaagctgtaagtctgccacacagaaatcatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
7321910 |
cagagaacacaaaatcatctgctgttacatttgtttctgacttgcatggatagcctgaaggagtgtttggaagctgtaaatctgccacacagaaatcatt |
7321811 |
T |
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| Q |
210 |
gacagaagtagcataagaggt |
230 |
Q |
| |
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||||||||||||||||||||| |
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| T |
7321810 |
gacagaagtagcataagaggt |
7321790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 7319684 - 7319453
Alignment:
| Q |
13 |
gagataccaagtccattaagacctggtaaactagtgacaaatgcagtggttaatgtaacattaaaagggtctaatattgtgcttccaggtacaaagccag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||| | | |
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| T |
7319684 |
gagataccaagtccattaagacctggtaaactagtgacgaatgcagtggttaatctaacattaaaagggtcta---ttgtgtttctaggtacaaagtcgg |
7319588 |
T |
|
| Q |
113 |
agaacacaaaatcatctgctgttacatttgtttctgacttgcatggataaccagaaggggtgtttggaagctgtaagtctgccacacagaaatcattgac |
212 |
Q |
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|||| | ||||||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
7319587 |
agaataaaaaatcatccactgttacatttgtttctgacttgcatggatagcctgaaggggtatttggaagctgtaagtctgcaacacagaaatcattgac |
7319488 |
T |
|
| Q |
213 |
agaagtagcataagaggtatatgatgagggaagag |
247 |
Q |
| |
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|||||||||||||||| ||||||| || |||||| |
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| T |
7319487 |
tgaagtagcataagaggcatatgataagagaagag |
7319453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 7324681 - 7324579
Alignment:
| Q |
106 |
aagccagagaacacaaaatcatctgctgttacatttgtttctgacttgcatggataaccagaaggggtgtttggaagctgtaagtctgccacacagaaat |
205 |
Q |
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||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||| || |||||||||| ||||| | ||||||||| |||||||||| |
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| T |
7324681 |
aagccagagaatacaaaatcatcagctgttacattgttttccgacttgcatggatagcccgaaggggtgtctggaaacgataagtctgctacacagaaat |
7324582 |
T |
|
| Q |
206 |
cat |
208 |
Q |
| |
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||| |
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|
| T |
7324581 |
cat |
7324579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 2345318 - 2345513
Alignment:
| Q |
10 |
gcagagataccaagtccattaagacctggtaaactagtgacaaatgcagtggttaatgtaacattaaaagggtctaatattgtgcttccaggtacaaagc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||| || |||||||||||||||| |||| |
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| T |
2345318 |
gcagagataccaagtccattaagacctggtaaactagtgacaaatgcagatgttattgcaaaattaaaagggttta---ttgtgcttccaggtactaagc |
2345414 |
T |
|
| Q |
110 |
cagagaacacaaaatcatctgctgttacatttgtttctgacttgcatggataaccagaaggggtgtttggaagctgtaagtctgccacacagaaatcat |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||||||||| || |||||||||| ||||| ||||||| |
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| T |
2345415 |
cagagaacacaaaatcattcactgttacatttgtttctgatttgcatggatagcctgaaggggtgtttgggagtagtaagtctgctacacataaatcat |
2345513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 32984314 - 32984281
Alignment:
| Q |
95 |
ttccaggtacaaagccagagaacacaaaatcatc |
128 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
32984314 |
ttccaggtacaaagccagagaacacaaaatcatc |
32984281 |
T |
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