View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3480_low_3 (Length: 412)
Name: NF3480_low_3
Description: NF3480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3480_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 23423395 - 23423009
Alignment:
| Q |
16 |
caccatctaccaaagagagtttttgacacgcacaaagaaatgctttgtatgtttcacttgatcttccaaaaagaacagggtcaggaaaatcctttacctt |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23423395 |
caccatctaccaaagagagtctttgacacgcacaaagaaatgctttgtatgtttcacttgatcttccaaaaagaacagggtcaggaaaatcttttacctt |
23423296 |
T |
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| Q |
116 |
aaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccaagaactcagaggaaacactctcatctagtttgggaagattaagacagaattga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423295 |
aaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccatgaactcaaaggaaacactctcatctagtttgggaagattaagacagaattga |
23423196 |
T |
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| Q |
216 |
agtgatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423195 |
agtgatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaa |
23423096 |
T |
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| Q |
316 |
caaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatagggtatagagtgtttaactgtgagtttcatctgtg |
402 |
Q |
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| T |
23423095 |
caaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatagggtatagagtgtttaactgtgagtttcatttgtg |
23423009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 549233 - 549619
Alignment:
| Q |
16 |
caccatctaccaaagagagtttttgacacgcacaaagaaatgctttgtatgtttcacttgatcttccaaaaagaacagggtcaggaaaatcctttacctt |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
549233 |
caccatctaccaaagagagtatttgacacgcacaaagaaatgctttgtatgtttcacttgatcttccaaaaagaacagggtcaggaaaatcatttacctt |
549332 |
T |
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| Q |
116 |
aaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccaagaactcagaggaaacactctcatctagtttgggaagattaagacagaattga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549333 |
aaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccatgaactcaaaggaaacactctcatctagtttgggaagattaagacagaattga |
549432 |
T |
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| Q |
216 |
agtgatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
549433 |
agtgatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcacttgagaaaagatcaaaaaccaaaccaa |
549532 |
T |
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| Q |
316 |
caaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatagggtatagagtgtttaactgtgagtttcatctgtg |
402 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
549533 |
caaagtttgtttttgaacaagttacgattttgttaacttcttgatgcaaatagggtatagagtgtttaactgtgagtttcatttgtg |
549619 |
T |
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