View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3480_low_4 (Length: 384)
Name: NF3480_low_4
Description: NF3480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3480_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 376
Target Start/End: Complemental strand, 2231615 - 2231249
Alignment:
| Q |
7 |
catataacttatgaatattattgctatcaaatgatcattttaatttgatgaggtctaggcttaccccttaaacaacaatgaacatgactggttcattttt |
106 |
Q |
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| T |
2231615 |
catataacttatgaatattattgctatcaaatgatcattttaatttgatgaggtctaggcttaccccttaaacaacaatgaacatgactggttcattttt |
2231516 |
T |
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| Q |
107 |
attagttgtttggtaaattactcacaatttataatgagataacctagnnnnnnnnncctttttatttttatcctatttatgattttggtaaataacagaa |
206 |
Q |
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| T |
2231515 |
attagttgtttggtaaattactcacaatttataatgagataacctagaaaaaaa--cctttttatttttatcctatttatgattttg-taaataacagaa |
2231419 |
T |
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| Q |
207 |
aatgctactatgaaataatttttcagaagtatttattttcattatttgatgtataaattttgaaaataaaaatagagtataaaactcttaatttaagttt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2231418 |
aatgctactatgaaataatttttcagaagtatttattttcattatttgatgtataaattttgaaaataaaaatagagtataaaactcttaatttatgttt |
2231319 |
T |
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| Q |
307 |
ggtataattttaacttccggttattataaaattatcacattatttgtttttaattgtaattttttcatat |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231318 |
ggtataattttaacttccggttattataaaattatcacattatttgtttttaattgtaattttttcatat |
2231249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 26439521 - 26439484
Alignment:
| Q |
101 |
atttttattagttgtttggtaaattactcacaatttat |
138 |
Q |
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|||||||||||||||| | ||||||||||||||||||| |
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| T |
26439521 |
atttttattagttgttggataaattactcacaatttat |
26439484 |
T |
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