View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3480_low_6 (Length: 355)
Name: NF3480_low_6
Description: NF3480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3480_low_6 |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: scaffold1157 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 399 - 73
Alignment:
| Q |
18 |
aatctgcatatgtgaaattcagaaattcagaatatctagtaattaaattcagaatttcagtaactgctataacaaactgaccgctgtgattcgcacaaag |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
399 |
aatctgcatatgtgaaattcagaatttcagaatatctagtaattaaattcagaatttcagtaactgctataacaaactgaccgctgtgattcgcgcaaag |
300 |
T |
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| Q |
118 |
ccaattggtccacaagctttctcaacagaacggtatatgaaaaattggtaaatgcaaagtgcaactcctaatagtttcacaattagtaattatacaaaat |
217 |
Q |
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| T |
299 |
ccaattggtccacaagctttctcaacagaagggtatatgaaaaattggtaaatgcaaagtgcaactcctaatagtttcacaattagtaattatacaaaat |
200 |
T |
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| Q |
218 |
atccattttacaataggtattcgaagatcaacgcttgatatataataatatgtctaattatctatgagtttaattttaatacactgcgtaaaaagtatta |
317 |
Q |
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| T |
199 |
atccattttataataggtattcgaagatcaacgtttgatatattataatatgtctaattatctatgagtttaattttgatacactgcgtaaaaagtatta |
100 |
T |
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| Q |
318 |
cacaaacgttcttaatgatctgatgat |
344 |
Q |
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| T |
99 |
cacaaacgttcttaatgatctgatgat |
73 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 16568736 - 16569062
Alignment:
| Q |
18 |
aatctgcatatgtgaaattcagaaattcagaatatctagtaattaaattcagaatttcagtaactgctataacaaactgaccgctgtgattcgcacaaag |
117 |
Q |
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| T |
16568736 |
aatctgcatatgtgaaattcagaatttcagaatatctagtaattaaattcagaatttcagtaactgctataacaaactgaccgctgtgattcgcgcaaag |
16568835 |
T |
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| Q |
118 |
ccaattggtccacaagctttctcaacagaacggtatatgaaaaattggtaaatgcaaagtgcaactcctaatagtttcacaattagtaattatacaaaat |
217 |
Q |
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| T |
16568836 |
ccaattggtccacaagctttctcaacagaagggtatatgaaaaattggtaaatgcaaagtgcaactcctaatagtttcacaattagtaattatacaaaat |
16568935 |
T |
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| Q |
218 |
atccattttacaataggtattcgaagatcaacgcttgatatataataatatgtctaattatctatgagtttaattttaatacactgcgtaaaaagtatta |
317 |
Q |
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| T |
16568936 |
atccattttataataggtattcgaagatcaacgtttgatatattataatatgtctaattatctatgagtttaattttgatacactgcgtaaaaagtatta |
16569035 |
T |
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| Q |
318 |
cacaaacgttcttaatgatctgatgat |
344 |
Q |
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| T |
16569036 |
cacaaacgttcttaatgatctgatgat |
16569062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 48 - 320
Target Start/End: Original strand, 16527185 - 16527458
Alignment:
| Q |
48 |
aatatctagtaattaaattcagaatttcagtaactgctataacaa--actgaccgctgtgattcgcacaaagccaattggtccacaagctttctcaacag |
145 |
Q |
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|||| |||| ||| |||||||||||| || |||||||||||| | ||||||| ||||||| || ||| |||||| |||||||||||||| ||||||| |
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| T |
16527185 |
aatagctagcaatgaaattcagaatt-caataactgctataatagttactgacccctgtgatgcggccaaggccaataggtccacaagctttttcaacag |
16527283 |
T |
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| Q |
146 |
aacggtatatgaaaaattggtaaatgcaaagtgcaactcctaatagttt--cacaattagtaattatacaaaatatccattttacaataggtattcgaag |
243 |
Q |
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| T |
16527284 |
aagggtatatgaaaagttggtagatgcaaagtgcaactcctaataatttcacacaattagtaattatacaaaatatctattttataatagctattcaaag |
16527383 |
T |
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| Q |
244 |
atcaacgcttgatatataataatatgtctaattatctatgagtttaattttaatacactgcgtaaaaagtattacac |
320 |
Q |
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||||| |||| |||||| ||||| ||||||||||| ||||||||||||| ||||| ||| |||||||| |||||| |
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| T |
16527384 |
atcaaaacttg--atataaaaatatatctaattatctctgagtttaattttgatacattgcttaaaaagttttacac |
16527458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 16587676 - 16587774
Alignment:
| Q |
119 |
caattggtccacaagctttctcaacagaacggtatatgaaaaattggtaaatgcaaagtgcaactcctaatagtttcacaa--ttagtaattatacaaa |
215 |
Q |
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| T |
16587676 |
caataggtccacaagctttttccacatatgggtatatgaaaagttggtagatgcaaagtgcaactcctaataatttcacaaagttagtaactatacaaa |
16587774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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