View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3481_high_1 (Length: 520)
Name: NF3481_high_1
Description: NF3481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3481_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 81 - 513
Target Start/End: Complemental strand, 10634373 - 10633942
Alignment:
| Q |
81 |
aagaggttccatataatctaccgttctatctcaagataatagaaagaaagaaaaatactataaagtttcaattcaaatttcatggcaaatgttgtaagat |
180 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10634373 |
aagaggttccatataatctaccgttctatctcaagataatagaaagaaa-aaaaatactataaagtttcaattcaaatttcatggcaaatgttgtaagat |
10634275 |
T |
|
| Q |
181 |
taagatcaagttttaatcaaggttctgaagtgacaatcaatataggagttgttaatgttcatgacaccaagggagtagaaaacaatccttttcatgtcct |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10634274 |
taagatcaagttttaatcaaggttctgaagtgacaatcaatataggagttgttaatgttcatgacaccaagggagtagaaaacaatccttttcatgtcct |
10634175 |
T |
|
| Q |
281 |
tatggccttcannnnnnnngtactcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctct |
380 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10634174 |
tatggccttcattttttttgtactcattggtttcctccaaattcgatatccagaaaatccaacctcgtttgaagtccatccaaagacaatgtttgtctct |
10634075 |
T |
|
| Q |
381 |
atggctagttttttgctatattgtttggccttttggattaagattaggtttgccacaagggttgttgaggggaaaattgataccctccttcaaatgtctg |
480 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||| |||||| || |||||| |||| |||||||||||||| ||||||||||||| || |
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| T |
10634074 |
atggctagttttttactatattgcttggccttttggattaagattaagtttgctactagggtttttgaagggaaaattgatacactccttcaaatgtttg |
10633975 |
T |
|
| Q |
481 |
gttcgctctcaataatttctttggtgatgatgt |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
10633974 |
gttcgctctcaataatttctttggtgatgatgt |
10633942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 300 - 444
Target Start/End: Complemental strand, 10698440 - 10698296
Alignment:
| Q |
300 |
gtactcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctagttttttgctat |
399 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||||||||| | ||| || |||||||||||| || ||| || ||||| ||||||||| | |||| |
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| T |
10698440 |
gtactccttggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctat |
10698341 |
T |
|
| Q |
400 |
attgtttggccttttggattaagattaggtttgccacaagggttg |
444 |
Q |
| |
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||||||||||||||||||||||| ||| |||| | |||||||||| |
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| T |
10698340 |
attgtttggccttttggattaagcttaagtttacaacaagggttg |
10698296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 444
Target Start/End: Complemental strand, 10690507 - 10690363
Alignment:
| Q |
300 |
gtactcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctagttttttgctat |
399 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||||||||||| | ||| |||||||||||||||||| ||| || ||||| ||||| ||| | |||| |
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|
| T |
10690507 |
gtactccttggtttcctccaagttagatatccagaaaatcctaccccttttcaagtccatccaaagacaacgttggtatctattgctagctttctactat |
10690408 |
T |
|
| Q |
400 |
attgtttggccttttggattaagattaggtttgccacaagggttg |
444 |
Q |
| |
|
|||| |||||||| ||||||| ||| |||||| |||||||||| |
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|
| T |
10690407 |
attgcttggccttcatgattaagcttaagtttgctacaagggttg |
10690363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 228 - 444
Target Start/End: Complemental strand, 10707721 - 10707505
Alignment:
| Q |
228 |
gttgttaatgttcatgacaccaagggagtagaaaacaatccttttcatgtccttatggccttcannnnnnnngtactcattggtttcctccaaattcgat |
327 |
Q |
| |
|
|||||||||||| | ||| || ||||||||||| ||| ||| | ||| |||||||||||||| |||||| ||| ||||||||||||| | |
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|
| T |
10707721 |
gttgttaatgtttacaacatcatgggagtagaaaccaaccctctacatagccttatggccttcattttctttgtactccttgctttcctccaaattactt |
10707622 |
T |
|
| Q |
328 |
atccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctagttttttgctatattgtttggccttttggattaagattag |
427 |
Q |
| |
|
||||||| ||||| || | ||| || |||||||||| |||||| | ||||| | ||||| ||| | ||||||||||| ||||||||||||||| ||| |
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|
| T |
10707621 |
atccagataatcccactgcatttcaaatccatccaaaaacaatgataatctctgttgctagctttctactatattgttttgccttttggattaagcttat |
10707522 |
T |
|
| Q |
428 |
gtttgccacaagggttg |
444 |
Q |
| |
|
|||||| |||||||||| |
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|
| T |
10707521 |
gtttgcaacaagggttg |
10707505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 433
Target Start/End: Complemental strand, 10657802 - 10657597
Alignment:
| Q |
228 |
gttgttaatgttcatgacaccaagggagtagaaaacaatccttttcatgtccttatggccttcannnnnnnngtactcattggtttcctccaaattcgat |
327 |
Q |
| |
|
|||||||||||| || ||| || ||||||||||| ||||||| | |||| ||||||| ||||| || |||||||||||||| |||||| | | |
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|
| T |
10657802 |
gttgttaatgtttataacatcatgggagtagaaaccaatcctctccatggccttatgaccttccttttctttgtcctcattggtttccttcaaattagtt |
10657703 |
T |
|
| Q |
328 |
atccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctagttttttgctatattgtttggccttttggattaagattag |
427 |
Q |
| |
|
||||| | ||||| || | ||| ||| |||||||||||||||| | ||||| | ||||| ||| | |||||||| || ||||||||||||||| ||| |
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|
| T |
10657702 |
atccaaataatcccactgcatttcaagcccatccaaagacaatgctactctctgtagctagctttctactatattgctttgccttttggattaagcttaa |
10657603 |
T |
|
| Q |
428 |
gtttgc |
433 |
Q |
| |
|
|||||| |
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|
| T |
10657602 |
gtttgc |
10657597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 10634433 - 10634388
Alignment:
| Q |
18 |
acatggtaagtttgggtgatatcgagacgacccattaaagaaagac |
63 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||||||||| |
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|
| T |
10634433 |
acatggtaagtgtgagtgatatcgatacgacccattaaagaaagac |
10634388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 182 - 438
Target Start/End: Original strand, 33777184 - 33777443
Alignment:
| Q |
182 |
aagatcaagttttaatcaaggttctgaagtgacaatcaatatag---gagttgttaatgttcatgacaccaagggagtagaaaacaatccttttcatgtc |
278 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||| | | |||||||||||| || ||| || ||| ||||||| |||||||||||||| | |
|
|
| T |
33777184 |
aagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatggc |
33777283 |
T |
|
| Q |
279 |
cttatggccttcannnnnnnngtactcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtct |
378 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| | |||||||| ||||| || | ||| | ||||||||||||||||||||||||| |
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|
| T |
33777284 |
cttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtct |
33777383 |
T |
|
| Q |
379 |
ctatggctagttttttgctatattgtttggccttttggattaagattaggtttgccacaa |
438 |
Q |
| |
|
|||| ||||| ||| | ||||||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
33777384 |
ctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaa |
33777443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 231 - 436
Target Start/End: Original strand, 33774598 - 33774802
Alignment:
| Q |
231 |
gttaatgttcatgacaccaagggagtagaaaacaatccttttcatgtccttatggccttcannnnnnnngtactcattggtttcctccaaattcgatatc |
330 |
Q |
| |
|
||||||||| || ||| || ||||||||||| ||||| |||||||| |||||||||||||| | ||||||||||||||| |||||| | |||| |
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|
| T |
33774598 |
gttaatgtttataacatcatgggagtagaaaccaatcattttcatggccttatggccttcattttct--ggactcattggtttccttcaaattagttatc |
33774695 |
T |
|
| Q |
331 |
cagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctag-ttttttgctatattgtttggccttttggattaagattaggt |
429 |
Q |
| |
|
|||| ||||| || | ||| | |||||||||||||||||||||||| |||| ||||| |||| | |||||||| |||| ||| |||||||| |||| || |
|
|
| T |
33774696 |
cagataatcccactgcatttcatgtccatccaaagacaatgtttgtcactattgctagcttttctactatattgcttggtcttctggattaatattaagt |
33774795 |
T |
|
| Q |
430 |
ttgccac |
436 |
Q |
| |
|
|| |||| |
|
|
| T |
33774796 |
ttaccac |
33774802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 15246718 - 15246769
Alignment:
| Q |
358 |
atccaaagacaatgtttgtctctatggctagttttttgctatattgtttggc |
409 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||| | |||||||||||||| |
|
|
| T |
15246718 |
atccaaagacaatgttagtctctattgctagctttctactatattgtttggc |
15246769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 421
Target Start/End: Original strand, 15240381 - 15240447
Alignment:
| Q |
355 |
tccatccaaagacaatgtttgtctctatggctagttttttgctatattgtttggccttttggattaa |
421 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||| | ||||||| ||| || |||||| |||| |
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|
| T |
15240381 |
tccatccaaagacaatgttagtctctattgctagctttctactatattctttagcattttgggttaa |
15240447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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