View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3481_high_12 (Length: 254)
Name: NF3481_high_12
Description: NF3481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3481_high_12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 30432003 - 30432254
Alignment:
| Q |
1 |
cattatttcaaatgtccatgattctaagctgtgaaacgttagtgatacaaatagagatgcaattagaatttctcaatggataaaatagtctcatatatgt |
100 |
Q |
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| T |
30432003 |
cattatttcaaatgtccatgattctaagctgtaaaacgttagtgatacaaatagagatgcagttagaatttctcaatggataaaatagtctcatatatgt |
30432102 |
T |
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| Q |
101 |
ataacactatattaaaatagaacaattccatttcaatgtatatgtgccaaataaaaagaatttaatttaaagacaatgtaaattcaaaacaaatttcaca |
200 |
Q |
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| T |
30432103 |
ataacactat--taaaatagaacaattccatttcaatgtaaatgtgccaaataaaaagaatttaatttaaagacaatgtatatttaaaacaaatttcaca |
30432200 |
T |
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| Q |
201 |
ttacacgtatattgggtgtgtgtcaatggcgccttaacaaaatttggactagtt |
254 |
Q |
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| T |
30432201 |
ttacacgtatattgggtgtgtgtcaatggcaccttaacaaaatttagaatagtt |
30432254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 30415366 - 30415481
Alignment:
| Q |
1 |
cattatttcaaatgtccatgattctaagctgtgaaacgttagtgatacaaatagagatgcaattagaatttctcaatggataaa----atagtctcatat |
96 |
Q |
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|||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||| |
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| T |
30415366 |
cattatttgaaatgtccatgattctaagctgtaaaatgttagtgatac-aatagagatgcaattagaaattctcagtggataaataacatagtctcatat |
30415464 |
T |
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| Q |
97 |
atgtataacactatatt |
113 |
Q |
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| T |
30415465 |
ttgtataacattatatt |
30415481 |
T |
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