View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3481_high_13 (Length: 249)
Name: NF3481_high_13
Description: NF3481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3481_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 28560681 - 28560455
Alignment:
| Q |
5 |
cagatacctcaacatcttcatcagcttcctttagagcttcatttttagcctgtagagctttcaccattttgccttttggatttgagtgttatagacttga |
104 |
Q |
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| T |
28560681 |
cagatacctcaacatcttcatcagcttcctatagagcttcatctttagcctgcagagctttcaccattttgccttttggatttgagtgttatagacttga |
28560582 |
T |
|
| Q |
105 |
ctttaggtttatcatcatcatgattcaactctaactcatgactcaccgggttgctaataagggactcaagtcccagtttgttcatatttttagcttcttg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28560581 |
ctttaggtttatcatcatcatgattcaactctaactcatgactcaccgggctgctaataagggactcaagtcccagtttgttcatatttttagcttcttg |
28560482 |
T |
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| Q |
205 |
gatagatgtaaccttaggcctccactt |
231 |
Q |
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||||||||||||||| ||||||||||| |
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| T |
28560481 |
gatagatgtaaccttgggcctccactt |
28560455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 30343578 - 30343410
Alignment:
| Q |
2 |
catcagatacctcaacatcttcatcagcttcctttagagcttcatttttagcctgtagagctttcaccattttgccttttggatttgagtgttatagact |
101 |
Q |
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||||||| | ||||||||||||||||||||||| | ||||||||| || ||| || |||||||||||| ||||||| || |||| |||||||||||||| |
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| T |
30343578 |
catcagagagctcaacatcttcatcagcttcctctggagcttcatcttcagcttgcagagctttcaccgttttgccatt-ggatctgagtgttatagaca |
30343480 |
T |
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| Q |
102 |
tgactttaggtttatcatcatcatgattcaactctaactcatgactcaccgggttgctaataagggactc |
171 |
Q |
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| T |
30343479 |
tggctttaggtttagcctcatcatgattcagctttaacacgtgactcatcaggttgctaattagggactc |
30343410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30347486 - 30347441
Alignment:
| Q |
1 |
tcatcagatacctcaacatcttcatcagcttcctttagagcttcat |
46 |
Q |
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|||||||| | ||||||||||||||||||||||| | ||||||||| |
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| T |
30347486 |
tcatcagagagctcaacatcttcatcagcttcctctggagcttcat |
30347441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 23213089 - 23212970
Alignment:
| Q |
10 |
acctcaacatcttcatcagcttcctttagagcttcatttttagcctgtagagctttcaccattttgccttttggatttgagtgttatagacttgacttta |
109 |
Q |
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|||||||||||||||| |||||||||| ||||||||| || |||||| ||| |||| |||||||| | |||||||||||| ||||||||||| |||| |
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| T |
23213089 |
acctcaacatcttcattagcttcctttggagcttcatcttcagcctgcagacctttgaccatttttgcctttggatttgagcattatagacttggattta |
23212990 |
T |
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| Q |
110 |
ggtttatcatcatcatgatt |
129 |
Q |
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|||||| | ||||||||||| |
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| T |
23212989 |
ggtttagcctcatcatgatt |
23212970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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