View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3481_high_3 (Length: 495)
Name: NF3481_high_3
Description: NF3481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3481_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 478
Target Start/End: Complemental strand, 152173 - 151702
Alignment:
| Q |
7 |
tccaagaatatcaagtcccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgatttggattgcttgt |
106 |
Q |
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| T |
152173 |
tccaacaaaatcaagtcccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgt |
152074 |
T |
|
| Q |
107 |
attcatgttcatgttttgatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaattt |
206 |
Q |
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| T |
152073 |
attcatgttcatgttttgatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaattt |
151974 |
T |
|
| Q |
207 |
ctctttgcttatgttgggaaatttctctgcataacattttcttatttgttgttctttgctttcgagatagagtttgtagatcttgatcatggattgttga |
306 |
Q |
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| T |
151973 |
ctctttgcttatgttgggaaatttctctgcataacattttcttatttgttgttctttgctttcgagatagagtttgtagatcttgatcatggattgttga |
151874 |
T |
|
| Q |
307 |
ttgaattgagataaacgctcatagaagaaaaggaaataccnnnnnnngtgttcttgcattggttgaagttcttcatttccaaggtgaattggaccaattg |
406 |
Q |
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| T |
151873 |
ttgaattgagataaacgctcatagaagaaaaggaaatacctttttttgtgttcttgcattggttgaagttcttcatttccaaggtgaattggaccaattg |
151774 |
T |
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| Q |
407 |
agattaattcaggagtgtaagcttcttgtttcacttttcggagattgtgaggaaccttgtagatgctacatt |
478 |
Q |
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| T |
151773 |
agattaattcaggagtgtaagcttcttgtttcacttttcggagattgtgaggaaccttgtagatgctacatt |
151702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Complemental strand, 160608 - 160139
Alignment:
| Q |
7 |
tccaagaatatcaagtcccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgatttggattgcttgt |
106 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
160608 |
tccaacaaaatcaagtcccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgt |
160509 |
T |
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| Q |
107 |
attcatgttcatgttttgatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaattt |
206 |
Q |
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| T |
160508 |
attcatgttcatgttttgatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaattt |
160409 |
T |
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| Q |
207 |
ctctttgcttatgttgggaaatttctctgcataacattttcttatttgttgttctttgctttcgagatagagtttgtagatcttgatcatggattgttga |
306 |
Q |
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| T |
160408 |
ctctttgcttatgttgggaaatttctctgcataacattttcttatttcttgttctttgttttcgagatagagtttgtagttcttgatcatggattgttga |
160309 |
T |
|
| Q |
307 |
ttgaattgagataaacgctcatagaagaaaaggaaataccnnnnnnngtgttcttgcattggttgaagttcttcatttccaaggtgaattggaccaattg |
406 |
Q |
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||||||||||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160308 |
ttgaattgagatagacgctcatagaagaaatggaaatacctttttttgtgttgttgcattggttgaagttcttcatttccaaggtgaattggaccaattg |
160209 |
T |
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| Q |
407 |
agattaattcaggagtgtaagcttcttgtttcacttttcggagattgtgaggaaccttgtagatgctaca |
476 |
Q |
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| T |
160208 |
agattagttgaggagtgtaagcttcttgtttcacttttcggagattgtgaggaaccttgtagatgctaca |
160139 |
T |
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