View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3481_high_4 (Length: 459)
Name: NF3481_high_4
Description: NF3481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3481_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 437
Target Start/End: Complemental strand, 7965459 - 7965036
Alignment:
| Q |
9 |
gtagagaaataaacacatcaaggtttgannnnnnnagtttggtccaacaataatagcctacatatgggaaaatgcaactctccaatcccggcccataaat |
108 |
Q |
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| T |
7965459 |
gtagagaaataaacacatcaagatttg--gttttcagtttggtccaacaataataacctacatatgggaaaatgcaactctccaattcc---caataaat |
7965365 |
T |
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| Q |
109 |
gagtttaattcttacaaacgataaaaataagttacaaaaaattagcttgaacaagttttctatgaacaatctaatttctacccatttttctatatctttt |
208 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7965364 |
gagtttaattcttacaaatgataaaaataagttataaaaaattagcttgaacaagttctctatgaacaatctaatttttacccatttttctatatctttt |
7965265 |
T |
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| Q |
209 |
tgtgaacaagagactcaacgactttcaatctccaaaatatttataatgagtttcacaacctaaaaatcttacgtaaagac----tctcaactgttagtct |
304 |
Q |
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| T |
7965264 |
tgtgatcaagagactcaactacttttaatctccaaaatatttataatgagtttcacaacctaaaaatcttacttaaaaccctcaactcaactgttagtct |
7965165 |
T |
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| Q |
305 |
ctaagattcttaaaa-ctatcttgtttagtttcacaagattaaccaaaaaaggatgagaaaactgaaatt-catagatattggacttgatgcagacacct |
402 |
Q |
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| T |
7965164 |
ctaagattcttaaaagctatcttgtttagtttcac------aaccacaaaaggatgagaaaactgaaattccatagatattggacttgatgcagacacct |
7965071 |
T |
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| Q |
403 |
tgcgcacagtcagcagatccaggatgcgccttgcg |
437 |
Q |
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| T |
7965070 |
tgcgcacagtcagcagatccaggatgctccttgcg |
7965036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 264 - 444
Target Start/End: Complemental strand, 7960391 - 7960210
Alignment:
| Q |
264 |
caacctaaaaatcttacgtaaagactctcaactgttagtctctaagattcttaaaa-ctatcttgtttagtttcacaagattaaccaaaaaaggatgaga |
362 |
Q |
| |
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|||||||||||||| || |||||| ||| ||| |||| ||||||||| ||||| | ||||||| |||||||||| |||||||| || ||||| |||||| |
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| T |
7960391 |
caacctaaaaatctcacacaaagaccctctacttttagcctctaagatacttaagagctatcttctttagtttcataagattaatcacaaaagaatgaga |
7960292 |
T |
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| Q |
363 |
aaactgaaattcatagatattggacttgatgcagacaccttgcgcacagtcagcagatccaggatgcgccttgcgtgttgct |
444 |
Q |
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| T |
7960291 |
aaactggaaatcatagatgatgtacctgatgtaggcaccttgcatcaagttagcatatccaggatgcgccttgcatgttgct |
7960210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 51398897 - 51398826
Alignment:
| Q |
128 |
gataaaaataagttacaaaaaattagcttgaacaagttttctatgaacaatc-taatttctacccatttttc |
198 |
Q |
| |
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|||| |||| |||||||| |||||||||| |||||||| ||| |||||| | ||||||||||||||||||| |
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| T |
51398897 |
gatacaaatgagttacaagaaattagcttcaacaagttcactaagaacaaccctaatttctacccatttttc |
51398826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 32744521 - 32744590
Alignment:
| Q |
128 |
gataaaaataagttacaaaaaattagcttgaacaagttttctatgaacaatctaatttctacccattttt |
197 |
Q |
| |
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|||| |||| |||||||| |||||||||| |||||| | | | |||||| ||||||||||||||||||| |
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| T |
32744521 |
gatacaaatgagttacaagaaattagcttaaacaagctcacaaagaacaaactaatttctacccattttt |
32744590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 17057454 - 17057525
Alignment:
| Q |
128 |
gataaaaataagttacaaaaaattagcttgaacaagttttctatgaacaa-tctaatttctacccatttttc |
198 |
Q |
| |
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| T |
17057454 |
gatacaaatgagttacaaaaaattagcttcaacaagcttgcaaagaacaaccctaatttctacccatttttc |
17057525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 17085437 - 17085508
Alignment:
| Q |
128 |
gataaaaataagttacaaaaaattagcttgaacaagttttctatgaacaa-tctaatttctacccatttttc |
198 |
Q |
| |
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|||| |||| ||||||||||||||||||| |||||| || | | |||||| |||||||||||||||||||| |
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| T |
17085437 |
gatacaaatgagttacaaaaaattagcttcaacaagcttgcaaagaacaaccctaatttctacccatttttc |
17085508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 48489503 - 48489445
Alignment:
| Q |
139 |
gttacaaaaaattagcttgaacaagttttctatgaacaa-tctaatttctacccatttt |
196 |
Q |
| |
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||||||| |||||||||| ||||||||||| | |||||| |||||||||||||||||| |
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| T |
48489503 |
gttacaagaaattagcttcaacaagttttcaaagaacaaccctaatttctacccatttt |
48489445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 4586244 - 4586175
Alignment:
| Q |
128 |
gataaaaataagttacaaaaaattagcttgaacaagttttctatgaacaa-tctaatttctacccatttt |
196 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||| | | |||||| |||||||||||||||||| |
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| T |
4586244 |
gataaaaatgggttacaaaaaattagcttcaacaagttcacaaagaacaaccctaatttctacccatttt |
4586175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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