View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3481_high_5 (Length: 329)
Name: NF3481_high_5
Description: NF3481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3481_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 28560677 - 28560995
Alignment:
| Q |
1 |
atctggtgatgatgaactacgtttctaaccataagagttcaacaattatggaagcagataggtaaagctcccatgaaaggtggttttccttctacatgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||| |
|
|
| T |
28560677 |
atctggtgatgatgaactacgtttctaaccataagagttcaacaattatggaagcagatagttaaagctcccatgaaaggtggttttccctctagaggtt |
28560776 |
T |
|
| Q |
101 |
caagctttagagagaagaaggaagaaacaacgaattgctttcactacaagaggcctggtcatttgaaagctgattctccttatttctagaatgacaaatc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
28560777 |
caagctttacagagaagaaggaagaaacaaagaattgctttcactacaagaggcctggtcatttcaaagctgattatccttatttctagaatgacaaatc |
28560876 |
T |
|
| Q |
201 |
caagaaggtaagcttcaaaaacaaagtgaagaagagtctcatggctacacgagaagatcttgatgaagaatcataaaatgatgaagaagttatcttggta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28560877 |
caagaaggtaagcttcaaaaacaaagtgaagaagagtctcatggctacacgggaagatcttgatgaagaatcataaaatgatgaagaagttatcttggta |
28560976 |
T |
|
| Q |
301 |
ctcatggcaacatcctatg |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28560977 |
ctcatggcaacatcctatg |
28560995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 23213284 - 23213339
Alignment:
| Q |
194 |
acaaatccaagaaggtaagcttcaaaaacaaagtgaagaagagtctcatggctaca |
249 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23213284 |
acaaatccaagaaggaaagcttcaaaaacaaagtgaagaagagtctcatggttaca |
23213339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 24714893 - 24714817
Alignment:
| Q |
213 |
cttcaaaaacaaagtgaagaagagtctcatggctacacgagaagatcttgatgaagaatcataaaatgatgaagaag |
289 |
Q |
| |
|
|||||||||||| || ||||| ||||||||| | ||| || |||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
24714893 |
cttcaaaaacaaggtcaagaaaagtctcatgacaacataggaggatcttgaagaagagtcagaaaatgatgaagaag |
24714817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University