View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3481_high_6 (Length: 322)

Name: NF3481_high_6
Description: NF3481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3481_high_6
NF3481_high_6
[»] chr6 (1 HSPs)
chr6 (10-304)||(25521669-25521963)
[»] chr5 (8 HSPs)
chr5 (10-304)||(42124662-42124956)
chr5 (98-299)||(34231540-34231741)
chr5 (163-304)||(34239357-34239498)
chr5 (193-294)||(41712465-41712565)
chr5 (159-223)||(42118314-42118378)
chr5 (10-87)||(42130113-42130190)
chr5 (107-235)||(41570754-41570882)
chr5 (157-223)||(42130046-42130112)
[»] chr2 (1 HSPs)
chr2 (163-298)||(12249642-12249777)
[»] chr4 (4 HSPs)
chr4 (10-223)||(11119529-11119742)
chr4 (159-301)||(11119235-11119377)
chr4 (163-223)||(11119385-11119445)
chr4 (159-223)||(11119457-11119521)
[»] chr3 (1 HSPs)
chr3 (10-226)||(8524198-8524414)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 25521669 - 25521963
Alignment:
Q  10 catcatcacttataaaacttccgcgtctaacttccttggatcttcataggaacaaactcaggggtcgaattccaaatgtatttcagacgtcaaacaaatt 109  Q
    |||||||||||||||||||||| |||||||||| ||| |||||| ||| |||||||||||  |||||||||||||||| ||||||||| |||||||||||    
T  25521669 catcatcacttataaaacttccacgtctaacttacttagatctttatacgaacaaactcaatggtcgaattccaaatgcatttcagacatcaaacaaatt 25521768  T
Q  110 tcaagtattagatttgagtgataacaattttgaaggagaattgccaacatcactttcaaaccttcaacatctcattcgcttggatctttcatacaattca 209  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25521769 tcaagtattagattttagttataacaaatttgaaggagaattgccaacatcactttcaaaccttcaacatctcattcgcttggatctttcatacaattca 25521868  T
Q  210 tttagaggtcaaatcccagatgtgttcagtgggatgaccaaactgcaagaactcgatctatattttaacaaattagaaggacaaattccatcttc 304  Q
    |||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25521869 tttagaggtcaaatcccagacgtgttcggtgggatgaccaaattgcaagaactcgatctatattttaacaaattagaaggacagattccatcttc 25521963  T

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Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 42124956 - 42124662
Alignment:
Q  10 catcatcacttataaaacttccgcgtctaacttccttggatcttcataggaacaaactcaggggtcgaattccaaatgtatttcagacgtcaaacaaatt 109  Q
    |||| |||||| ||||||||||   |||||||| ||||||||| ||||  ||| ||||||  |||||| ||||||||| ||||||||  |||||||||||    
T  42124956 catcctcacttttaaaacttccaactctaactttcttggatctccataacaaccaactcaatggtcgacttccaaatgcatttcagatatcaaacaaatt 42124857  T
Q  110 tcaagtattagatttgagtgataacaattttgaaggagaattgccaacatcactttcaaaccttcaacatctcattcgcttggatctttcatacaattca 209  Q
    ||||| |||||||||||| | ||||||  ||||||| ||  |||||||||||||||||||||||| ||| ||||||| ||||||||||   |  ||||||    
T  42124856 tcaagaattagatttgagaggtaacaaaattgaaggtgagctgccaacatcactttcaaaccttcgacaactcattcacttggatcttgggtggaattca 42124757  T
Q  210 tttagaggtcaaatcccagatgtgttcagtgggatgaccaaactgcaagaactcgatctatattttaacaaattagaaggacaaattccatcttc 304  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||| ||  ||  ||||| |||||||||||||||||||||||    
T  42124756 tttagtggtcaaatcccagatgtgtttggtgggatgaccaaactgcaagaactcgatttaacttccaacaatttagaaggacaaattccatcttc 42124662  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 98 - 299
Target Start/End: Original strand, 34231540 - 34231741
Alignment:
Q  98 gtcaaacaaatttcaagtattagatttgagtgataacaattttgaaggagaattgccaacatcactttcaaaccttcaacatctcattcgcttggatctt 197  Q
    |||||||||||||||| || |||||||||||| ||||||  ||| ||| ||| | |||||||||||||||||||||| ||||||||||  ||||||||||    
T  34231540 gtcaaacaaatttcaaataatagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgacatctcattaacttggatctt 34231639  T
Q  198 tcatacaattcatttagaggtcaaatcccagatgtgttcagtgggatgaccaaactgcaagaactcgatctatattttaacaaattagaaggacaaattc 297  Q
    |||||||||||||| || |||||||| |||||||| ||  | ||||||||||||||||||||||||  ||||||||  ||||| |||| |||||||||||    
T  34231640 tcatacaattcattaagcggtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctatattcaaacaatttagtaggacaaattc 34231739  T
Q  298 ca 299  Q
    ||    
T  34231740 ca 34231741  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 304
Target Start/End: Original strand, 34239357 - 34239498
Alignment:
Q  163 tttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaatcccagatgtgttcagtgggatgaccaaactgcaagaact 262  Q
    |||||||||||||| ||||||| | |||| ||||||||  ||||||| |||| ||||||||||||||||| ||  || |||||||||||||||||| | |    
T  34239357 tttcaaaccttcaaaatctcatccacttgtatctttcaggcaattcacttagcggtcaaatcccagatgtatttggtaggatgaccaaactgcaagtatt 34239456  T
Q  263 cgatctatattttaacaaattagaaggacaaattccatcttc 304  Q
    | |||||  || ||||||||||||||||||||||||||||||    
T  34239457 ctatctagcttctaacaaattagaaggacaaattccatcttc 34239498  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 41712465 - 41712565
Alignment:
Q  193 atctttcatacaattcatttagaggtcaaatcccagatgtgttcagtgggatgaccaaactgcaagaactcgatctatattttaacaaattagaaggaca 292  Q
    ||||||||| |||||||||||| |||||||| |||||||||||  |||||||||||||| ||||||||||  ||||| | | |||||| ||| |||||||    
T  41712465 atctttcattcaattcatttagcggtcaaataccagatgtgtttggtgggatgaccaaa-tgcaagaactgtatctagagtctaacaatttaaaaggaca 41712563  T
Q  293 aa 294  Q
    ||    
T  41712564 aa 41712565  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 42118378 - 42118314
Alignment:
Q  159 tcactttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaat 223  Q
    |||||||||||||||||||| ||||||| |||||||||||| | |||||||||||| ||||||||    
T  42118378 tcactttcaaaccttcaacaactcattcacttggatctttcttccaattcatttagtggtcaaat 42118314  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 42130190 - 42130113
Alignment:
Q  10 catcatcacttataaaacttccgcgtctaacttccttggatcttcataggaacaaactcaggggtcgaattccaaatg 87  Q
    ||||||||||| ||| |||||| |||||||||| |||| ||||| | || ||| ||||||| ||||||||||||||||    
T  42130190 catcatcacttttaacacttccacgtctaactttcttgcatctttacagcaaccaactcagtggtcgaattccaaatg 42130113  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 235
Target Start/End: Original strand, 41570754 - 41570882
Alignment:
Q  107 atttcaagtattagatttgagtgataacaattttgaaggagaattgccaacatcactttcaaaccttcaacatctcattcgcttggatctttcatacaat 206  Q
    |||||||| | |||||||||| | ||||||  ||| ||| ||  | |||||||||||||||||||||||||||||| ||   || || || |||| ||||    
T  41570754 atttcaagaactagatttgagcggtaacaaaattggaggtgatcttccaacatcactttcaaaccttcaacatctcgttaatttagacctgtcatccaat 41570853  T
Q  207 tcatttagaggtcaaatcccagatgtgtt 235  Q
    ||||| || |||||||| ||||| |||||    
T  41570854 tcattcagtggtcaaattccagacgtgtt 41570882  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 42130112 - 42130046
Alignment:
Q  157 catcactttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaat 223  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||| | ||||  ||||| ||||||||    
T  42130112 catcacttccaaaccttcaacatctcattcacttagatctttcaaaaaatttgtttagcggtcaaat 42130046  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 163 - 298
Target Start/End: Complemental strand, 12249777 - 12249642
Alignment:
Q  163 tttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaatcccagatgtgttcagtgggatgaccaaactgcaagaact 262  Q
    ||||||||||||||| |||||||| | |||||||||||| |||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||    
T  12249777 tttcaaaccttcaacgtctcattcacgtggatctttcattcaattcatttagcggtcaaataccagatgtgtttagtgcgatgaccaaactgcaagaact 12249678  T
Q  263 cgatctatattttaacaaattagaaggacaaattcc 298  Q
    | |||||  ||  ||||||||| |||||||||||||    
T  12249677 caatctagcttcaaacaaattacaaggacaaattcc 12249642  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 11119742 - 11119529
Alignment:
Q  10 catcatcacttataaaacttccgcgtctaacttccttggatcttcataggaacaaactcaggggtcgaattccaaatgtatttcagacgtcaaacaaatt 109  Q
    |||| |||||| ||| |||||| |||||||||| |||||||||   |   ||| ||||||| |||||||||||||||| |||||||| ||||||||||||    
T  11119742 catcctcacttttaacacttccacgtctaactttcttggatctcggttacaaccaactcagtggtcgaattccaaatgcatttcagatgtcaaacaaatt 11119643  T
Q  110 tcaagtattagatttgagtgataacaattttgaaggagaattgccaacatcactttcaaaccttcaacatctcattcgcttggatctttcatacaattca 209  Q
    ||||  ||||||||||||| |||||||  ||||||| |   | ||||||||| |||||||||||||||| ||||||| ||||||||||  ||  ||||||    
T  11119642 tcaaaaattagatttgagtcataacaaaattgaaggtgtggttccaacatcaatttcaaaccttcaacaactcattcacttggatcttggatggaattca 11119543  T
Q  210 tttagaggtcaaat 223  Q
    ||||| | ||||||    
T  11119542 tttagtgatcaaat 11119529  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 159 - 301
Target Start/End: Complemental strand, 11119377 - 11119235
Alignment:
Q  159 tcactttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaatcccagatgtgttcagtgggatgaccaaactgcaag 258  Q
    |||||||||||||||||||| || |||| ||||||| |||| | |||| ||||||| |||| ||| |||||||||||  |||||||||| ||||||||||    
T  11119377 tcactttcaaaccttcaacaacttattcacttggatatttcttccaatgcatttagcggtccaataccagatgtgtttggtgggatgacaaaactgcaag 11119278  T
Q  259 aactcgatctatattttaacaaattagaaggacaaattccatc 301  Q
    |||||||  || ||| |||||| ||||||||||||||||||||    
T  11119277 aactcgacttagattataacaagttagaaggacaaattccatc 11119235  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 11119445 - 11119385
Alignment:
Q  163 tttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaat 223  Q
    |||||||||||||||| ||||||| ||||||||||  ||  ||||||||||| ||||||||    
T  11119445 tttcaaaccttcaacaactcattcacttggatcttggatggaattcatttagtggtcaaat 11119385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 11119521 - 11119457
Alignment:
Q  159 tcactttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaat 223  Q
    ||||||||||| |||||||| || |||| ||||||||||  ||  ||||||||||| ||||||||    
T  11119521 tcactttcaaatcttcaacaacttattcacttggatcttggatcgaattcatttagtggtcaaat 11119457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 8524414 - 8524198
Alignment:
Q  10 catcatcacttataaaacttccgcgtctaacttccttggatcttcataggaacaaactcaggggtcgaattccaaatgtatttcagacgtcaaacaaatt 109  Q
    |||| |||||| ||| |||||| |||||||||| ||||| |||   |   ||| ||||||| |||| ||||||||||| |||| | |  |||||||| ||    
T  8524414 catcctcacttttaacacttccacgtctaacttacttgggtctcatttacaacgaactcagtggtccaattccaaatgcatttgaaatttcaaacaattt 8524315  T
Q  110 tcaagtattagatttgagtgataacaattttgaaggagaattgccaacatcactttcaaaccttcaacatctcattcgcttggatctttcatacaattca 209  Q
    ||||| ||||| ||||||| |||||||  ||||||| ||  | ||||||||||| ||||||||||  |||||||||  ||||||| ||||||||||||||    
T  8524314 tcaagaattagttttgagtaataacaaaattgaaggtgagcttccaacatcactatcaaaccttcgtcatctcatttacttggatgtttcatacaattca 8524215  T
Q  210 tttagaggtcaaatccc 226  Q
    ||||| |||||| ||||    
T  8524214 tttagcggtcaattccc 8524198  T

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