View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3481_low_11 (Length: 270)
Name: NF3481_low_11
Description: NF3481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3481_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 87 - 261
Target Start/End: Original strand, 26450203 - 26450377
Alignment:
| Q |
87 |
atttgataaaagagaaattattattaataattgtggtagccattttacaactagtgaagatctgaactatattatttgaagttacaaattcaaattctgt |
186 |
Q |
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| T |
26450203 |
atttgataaaagagaaattattattaataattgtggtagccattttacaactagtgaagatctgaaatatattatttgaagttacaaattcaaattctgt |
26450302 |
T |
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| Q |
187 |
tcattgaacttactctaaaagatagattctatcctcttttatttgcgcgaaacttttggctcctcctcttcatct |
261 |
Q |
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| T |
26450303 |
tcattgaactgactctaaaagatagattctatcctcttttatttgcgagaaacttttggctcctcctcttcatct |
26450377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 82 - 257
Target Start/End: Original strand, 26436835 - 26437010
Alignment:
| Q |
82 |
ttattatttgataaaagagaaattattattaataattgtggtagccattttacaactagtgaagatctgaactatattatttgaagttacaaattcaaat |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
26436835 |
ttattatttgataaaagagaaattattattaataattgtggtagccattttacaactagtgaagatttgaactattttatatgaagttacaaattcaaat |
26436934 |
T |
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| Q |
182 |
tctgttcattgaacttactctaaaagatagattctatcctcttttatttgcgcgaaacttttggctcctcctcttc |
257 |
Q |
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| T |
26436935 |
tattttcattgaactgacactaaaatacaaattctatcctcttttattcgcgcgaaacttttggctcctcctcttc |
26437010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 21896091 - 21896141
Alignment:
| Q |
14 |
atcatgatctttattgcttagtattttatccaaactcttgagcattgtgaa |
64 |
Q |
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| T |
21896091 |
atcatgatcttcagtgcttcatatttaatccaaactcttgagcattgtgaa |
21896141 |
T |
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