View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3481_low_15 (Length: 238)

Name: NF3481_low_15
Description: NF3481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3481_low_15
NF3481_low_15
[»] chr2 (3 HSPs)
chr2 (18-238)||(37155277-37155498)
chr2 (42-238)||(37150131-37150324)
chr2 (89-238)||(37161011-37161160)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 37155498 - 37155277
Alignment:
Q  18 gtatgtatatgcatatattggtgttttaattcattacataatatgaatatatat--ttgcaggtgcttaaaagagtatttgcaattgtaagagtaattcg 115  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  37155498 gtatgtatatgcatatattgttgttt-aattcattacataatatgaatatatatatttgcaggtgcttaaaagagtatttgcaattgtaagagtaattcg 37155400  T
Q  116 atcaaaggatagtaaatacactgaaggagatatccttttgaatgggaatggttacgttgctgagtatagtattgtaccctcttctgacataatgaggaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37155399 atcaaaggatagtaaatacactgaaggagatatccttttgaatgggaatggttacgttgctgagtatagtattgtaccctcttctgacataatgaggaaa 37155300  T
Q  216 attgatcctgctaatgggatttc 238  Q
    |||||||||||||||||||||||    
T  37155299 attgatcctgctaatgggatttc 37155277  T

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Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 42 - 238
Target Start/End: Complemental strand, 37150324 - 37150131
Alignment:
Q  42 tttaattcattacataatatgaatatatatttgcaggtgcttaaaagagtatttgcaattgtaagagtaattcgatcaaaggatagtaaatacactgaag 141  Q
    |||||||||||  ||||| |||||||||||||||||||||||| || |   |||||  ||||||| ||||||||||| |||||||||||||||| ||| |    
T  37150324 tttaattcattgaataatgtgaatatatatttgcaggtgcttacaaca---tttgcggttgtaagggtaattcgatcgaaggatagtaaatacagtgagg 37150228  T
Q  142 gagatatccttttgaatgggaatggttacgttgctgagtatagtattgtaccctcttctgacataatgaggaaaattgatcctgctaatgggatttc 238  Q
    | |||||||||||||||||  |||||  ||||||||||||||| ||||||||||||||| | ||||| || ||||||||||||||||||||||||||    
T  37150227 gggatatccttttgaatggatatggtctcgttgctgagtatagcattgtaccctcttctcatataattagaaaaattgatcctgctaatgggatttc 37150131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 238
Target Start/End: Complemental strand, 37161160 - 37161011
Alignment:
Q  89 agtatttgcaattgtaagagtaattcgatcaaaggatagtaaatacactgaaggagatatccttttgaatgggaatggttacgttgctgagtatagtatt 188  Q
    |||||||||| |||||||||| ||| |||| |||||||||||||||| ||| || ||||| |||||||||   |||| |   |||||||| |||||||||    
T  37161160 agtatttgcagttgtaagagtgattagatccaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgctgaatatagtatt 37161061  T
Q  189 gtaccctcttctgacataatgaggaaaattgatcctgctaatgggatttc 238  Q
    ||||| |||||| | ||||  || ||||||||| || | |||||||||||    
T  37161060 gtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttc 37161011  T

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