View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3481_low_2 (Length: 498)
Name: NF3481_low_2
Description: NF3481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3481_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 13 - 480
Target Start/End: Complemental strand, 38488062 - 38487595
Alignment:
| Q |
13 |
aatatatcatatagacgagccatcgaaacaacaccatgccaaattatgcagcgctgcaaaactggtctaaatacttgagcaatcaataacataccccagc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38488062 |
aatatatcatatagacgagccatcgaaacaacaccatgccaaattatgcagcgctgcaaaactggcctaaatacttgagcaatcaataacataccccagc |
38487963 |
T |
|
| Q |
113 |
ctgtgggaatgaatgctaacaaactagtaaaaaggtccatgaatttgaattgagtgaattccaacaaagcaagtatcacaaatatggcaaaaactatgac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487962 |
ctgtgggaatgaatgctaacaaactagtaaaaaggtccatgaatttgaattgagtgaattccaacaaagcaagtatcacaaatatggcaaaaactatgac |
38487863 |
T |
|
| Q |
213 |
aagtgactgaatcaatctgtaatagatgtgattttttgcatcatattcattccttgcatatgctaccaccacataaataccaaacacaacaacaacataa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38487862 |
aagtgactgaatcaatctgtaatagatgtgattttttgcatcatattcattccttgcatatgctaccaccacataaataccaaacacgacaacaacataa |
38487763 |
T |
|
| Q |
313 |
atccatgatagcaagtaaacaactatgctggtacttcctgcagctatgtcgagctggtagacaataccgtactggaagacgaagaaacggaggtctaaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487762 |
atccatgatagcaagtaaacaactatgctggtacttcctgcagctatgccgagctggtagacaataccgtactggaagacgaagaaacggaggtctaaaa |
38487663 |
T |
|
| Q |
413 |
ttatctccataagctttccccaaaatcctgttccctttagatgatcttgctcttcgtaccaccacttt |
480 |
Q |
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| T |
38487662 |
ttatctccataagctttccccaaaatcctgttccctttagatgatcttgctcttcgtaccaccacttt |
38487595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 477
Target Start/End: Complemental strand, 30122461 - 30121997
Alignment:
| Q |
13 |
aatatatcatatagacgagccatcgaaacaacaccatgccaaattat-gcagcgctgcaaaactggtctaaatacttgagcaatcaataacataccccag |
111 |
Q |
| |
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||||||||||| |||||||||| | |||||||||| ||||||||| | || |||||| | ||||| || ||||| |||||||||| || ||||| |
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| T |
30122461 |
aatatatcataaagacgagccactgcaacaacaccactccaaattatcgtaga-ctgcaagaatggtcggaaaacttgggcaatcaatagcaggccccat |
30122363 |
T |
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| Q |
112 |
cctgtgggaatgaatgctaacaaactagtaaaaaggtccatgaatttgaattgagtgaattccaacaaagcaagtatcacaaatatggcaaaaactatga |
211 |
Q |
| |
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|||||||||| |||||| ||||| |||||||||| |||| ||||||||||| |||||||||| |||||||| ||||| || ||| |||| || ||||| |
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| T |
30122362 |
cctgtgggaaggaatgccaacaagctagtaaaaatatccacgaatttgaattctgtgaattccagcaaagcaactatcagaagtattgcaagaattatga |
30122263 |
T |
|
| Q |
212 |
caagtgactgaatcaatctgtaatagatgtgattttttgcatcatattcattccttgcatatgctaccaccacataaataccaaacacaacaacaacata |
311 |
Q |
| |
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|||| |||||| | | ||||||||| || | ||| || ||||| |||| |||||| ||||||| ||||||| ||| | |||||||||||||| |
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| T |
30122262 |
caaggaactgaacaagccggtaatagatatgctctttcgccgaatatttgttccgtgcatacactaccacggcataaatcccagatacaacaacaacata |
30122163 |
T |
|
| Q |
312 |
aatccatgatagcaagtaaacaactatgctggtacttcctgcagctatgtcgagctggtagacaataccgtactggaagacgaagaaacggaggtctaaa |
411 |
Q |
| |
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|||||||||||||||||| ||| | || || || |||| |||| || | || ||||| ||||| || |||||||| | |||||| || |||||||| |
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| T |
30122162 |
aatccatgatagcaagtatacagcaatactattatttccagcagaaattccaagttggtaaacaattccatactggaaaaagaagaagcgaaggtctaag |
30122063 |
T |
|
| Q |
412 |
attatctccataagctttccccaaaatcctgttccctttagatgatcttgctcttcgtaccaccac |
477 |
Q |
| |
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||||| |||| |||||||||||||| || ||| ||||||||||||| |||||||| ||||||||| |
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|
| T |
30122062 |
attatttccaaaagctttccccaaaggccggttacctttagatgatcctgctcttcataccaccac |
30121997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 22218348 - 22218405
Alignment:
| Q |
400 |
cggaggtctaaaattatctccataagctttccccaaaatcctgttccctttagatgat |
457 |
Q |
| |
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|||||||||||||| |||| || ||||||||||||||| | ||| |||||||||||| |
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|
| T |
22218348 |
cggaggtctaaaatcatctgcacaagctttccccaaaacctggttacctttagatgat |
22218405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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