View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3482_high_10 (Length: 578)
Name: NF3482_high_10
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_10 |
 | |
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| [»] scaffold0094 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 31242641 - 31242081
Alignment:
| Q |
1 |
gctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatttaaatga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31242641 |
gctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcacaacctgagacattgcaggtacgtaggaggatttaaatga |
31242542 |
T |
|
| Q |
101 |
atgttctatctctgcttacattaataagtatggttgattaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242541 |
atgttctatctctgcttacattaataagtatggttgattaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgt |
31242442 |
T |
|
| Q |
201 |
atgtaatttctttgagataaattatagtagttatgattatgaaaaataattaacaagcatgccatacagatctaactaaacaaggacatcatagcagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242441 |
atgtaatttctttgagataaattatagtagttatgattatgaaaaataattaacaagcatgccatacagatctaactaaacaaggacatcatagcagaaa |
31242342 |
T |
|
| Q |
301 |
ttttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatg--nnnnnnnggtatttcaattaatattctcacaact |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
31242341 |
ttttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgcctaagatatgtttttttttggtatttcaattaatattctcacaact |
31242242 |
T |
|
| Q |
399 |
ttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaattatgcaatcc |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242241 |
ttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaattatgcaatcc |
31242142 |
T |
|
| Q |
499 |
ttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaacttta |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31242141 |
ttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaacttta |
31242081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 145; Significance: 5e-76; HSPs: 6)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 270 - 559
Target Start/End: Original strand, 10781 - 11078
Alignment:
| Q |
270 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||| ||| | |
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|
| T |
10781 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatatattctgataaagaaaagctatattgcatgcctataataagttatt |
10880 |
T |
|
| Q |
370 |
nnggtatttc---------aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatctta |
460 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
10881 |
t-ggaatttctatgttatcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttctacctcatctta |
10979 |
T |
|
| Q |
461 |
atcagcaggaatcaatacagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaacttta |
559 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
10980 |
atcagcaaaaatcaacgtagtaagtaattatgcaattatattctttctattctcccttgacattaacttttccaatccttgatagaatcgtgaacttta |
11078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 270 - 448
Target Start/End: Complemental strand, 9099 - 8913
Alignment:
| Q |
270 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn |
369 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||| |||||||||||| | ||||||||| ||| ||| | |
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|
| T |
9099 |
atctaactaaacaagcatatcatagcagaaattttgattgtttaaaatatgatatattgtgataaagaaaagctatattgcatgcctataataagttatt |
9000 |
T |
|
| Q |
370 |
nnggtatttc---------aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttc |
448 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
8999 |
taga-atttctatgttgttaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttc |
8913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 10694 - 10782
Alignment:
| Q |
137 |
attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat |
225 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
10694 |
attaataagtatgtggcatgatgctcagaatattaggtttttaaatgttgttgctgatgtttgtatgtaatttctttgagataaattat |
10782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 10546 - 10652
Alignment:
| Q |
1 |
gctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatttaaatga |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||| ||||||| | ||| |||| ||||| ||| |||||| |||| ||||||||||||| |
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|
| T |
10546 |
gctgatttaagttttcttagagaagagattcaaaattcaggattcctttgtttgtcttcacaaccttagatattgcaagtac----aaggatttaaatga |
10641 |
T |
|
| Q |
101 |
atgttctatct |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
10642 |
atgttctatct |
10652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 9186 - 9098
Alignment:
| Q |
137 |
attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat |
225 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||| ||||| |||||||| | | |||||||||||| |||||||||| ||||||||| |
|
|
| T |
9186 |
attaataagtatgtggcatgatgctcacaatatcaggtttttaaatgttgttcatcatgtttgtatgttatttctttgatataaattat |
9098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9334 - 9227
Alignment:
| Q |
1 |
gctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatttaaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||| | | | |||| | ||| ||||||||||||||| || |||||||| | |
|
|
| T |
9334 |
gctgatttaagttttctcagagaagagattcaaaatctaggattcctttgtttcttttcacagcctaagacattgcaggtac----aagtatttaaatta |
9239 |
T |
|
| Q |
101 |
atgttctatctc |
112 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9238 |
atgttctatctc |
9227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 270 - 559
Target Start/End: Original strand, 17216101 - 17216397
Alignment:
| Q |
270 |
atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn |
369 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| | ||||| ||||||| |||| | |
|
|
| T |
17216101 |
atctaactaaacaaggacatcgtagcagaaattttgattgttcaaaacatgatatattctgataaagaaaagctatattgtatgtctatgataagttatt |
17216200 |
T |
|
| Q |
370 |
nnggtattt---------caattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatctta |
460 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
17216201 |
t-ggaatttttatgttgtcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcc--acaagatcttctacctcgtctta |
17216297 |
T |
|
| Q |
461 |
atcagcaggaatcaatacagtgagtaattatgcaatccttttc-tttccattctcccttggcattaacttttccaatccttgatagaatcatgaacttta |
559 |
Q |
| |
|
||||||| ||||||| |||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17216298 |
atcagcaaaaatcaatgcagtaagtaattatgcaattatattcttttccattctcccttggcattaacttttccaatccttgatagaatcgtgaacttta |
17216397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 378 - 559
Target Start/End: Complemental strand, 17214358 - 17214177
Alignment:
| Q |
378 |
tcaattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaata |
477 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
17214358 |
tcaattaatattctcacaactttgtttaattgcacaatgacaacaaccattgtcttcccaacaagatcttctacctcatcttaatcagcaagaatcaacg |
17214259 |
T |
|
| Q |
478 |
cagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaacttta |
559 |
Q |
| |
|
|||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
17214258 |
cagtaagtaattattcaattgtattctttccattctcccttggcattaacttttccaatccttaatagaattgtgaacttta |
17214177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 17216014 - 17216102
Alignment:
| Q |
137 |
attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat |
225 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17216014 |
attaataagtatgtggcatgatgctcaaaatatcaggtttttaaatgttgctgctgatgtttgtatttaatttctttgagataaattat |
17216102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 17214487 - 17214399
Alignment:
| Q |
137 |
attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat |
225 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| | ||||| |||||||||| | |||||||||||||||||||||| ||||||||||| |
|
|
| T |
17214487 |
attaataagtatgtggcatgatgctcataatataaggtttttaaatgttgcttcagatgtttgtatgtaatttctttaagataaattat |
17214399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 17214633 - 17214528
Alignment:
| Q |
3 |
tgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatttaaatgaat |
102 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||| | ||| |||| |||||||||||||||||||| | | ||||||||||||| |
|
|
| T |
17214633 |
tgatttaagtttactcagagaagagattcaaaatccaggattcctttgtttgtcttcacaacctgagacattgcaggta----gaatgatttaaatgaat |
17214538 |
T |
|
| Q |
103 |
gttctatctc |
112 |
Q |
| |
|
|||||||||| |
|
|
| T |
17214537 |
gttctatctc |
17214528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 17215866 - 17215973
Alignment:
| Q |
1 |
gctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatttaaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||| | | | |||| ||||||||||||| | | |||| |||| |||||||| |
|
|
| T |
17215866 |
gctgatttaagttttctcagagaagagattcaaaatctaggattcctttatttatcttcacaacctgagacattac----atgtagaaggacttaaatga |
17215961 |
T |
|
| Q |
101 |
atgttctatctc |
112 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17215962 |
atgttctatctc |
17215973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 17214400 - 17214367
Alignment:
| Q |
270 |
atctaactaaacaaggacatcatagcagaaattt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17214400 |
atctaactaaacaaggacatcatagcagaaattt |
17214367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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