View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_high_11 (Length: 537)
Name: NF3482_high_11
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 41757296 - 41757816
Alignment:
| Q |
1 |
gtcagttccaaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcagagggattcaagcctgcaaaggatgtatctattccagaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757296 |
gtcagttccaaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcagagggattcaagcctgcaaaggatgtatctattccagaaacc |
41757395 |
T |
|
| Q |
101 |
aatcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757396 |
aatcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgtta |
41757495 |
T |
|
| Q |
201 |
ggcctgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41757496 |
ggcctgttctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttaagaaaaag |
41757595 |
T |
|
| Q |
301 |
caagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggttgtgttccagtgctgatttcagatcattat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757596 |
caagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggttgtgttccagtgctgatttcagatcattat |
41757695 |
T |
|
| Q |
401 |
gttcctccattcagtgatgttttgaattggaaatcgttttctgttgaagtctctgtcaatgatatacctaatttgaagaaaattctaacgagtatatctc |
500 |
Q |
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| T |
41757696 |
gttcctccattcagtgatgttttgaattggaaatcgttttctgttgaagtctctgtcaatgatatacctaatttgaagaaaattctaacgagtatatctc |
41757795 |
T |
|
| Q |
501 |
caagacagtatataagaatgc |
521 |
Q |
| |
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||||||||||||||||||||| |
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| T |
41757796 |
caagacagtatataagaatgc |
41757816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 3 - 521
Target Start/End: Original strand, 41765381 - 41765899
Alignment:
| Q |
3 |
cagttccaaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcagagggattcaagcctgcaaaggatgtatctattccagaaaccaa |
102 |
Q |
| |
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||||||||||||||||||| ||||| || || ||| |||||||||| ||||| ||||||||||||||||| | ||| ||||||||||||||||||| ||| |
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| T |
41765381 |
cagttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagagggattcaagccagtaaaagatgtatctattccagaaatcaa |
41765480 |
T |
|
| Q |
103 |
tcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttagg |
202 |
Q |
| |
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| ||| |||||| | ||| ||| | || ||||||| ||||||||||||||| ||||| |||||||||||||||| |||||| |||||||| ||||| |
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| T |
41765481 |
tgttcgaaccggcataattgatgatcttcttggcggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattagg |
41765580 |
T |
|
| Q |
203 |
cctgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagca |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41765581 |
aatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgctatgttgagaaaaagca |
41765680 |
T |
|
| Q |
303 |
agttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggttgtgttccagtgctgatttcagatcattatgt |
402 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41765681 |
agttttgtctttgtcctagtgggtgggaggttgcaagtccaagagtggtggaagcaatatacacaggttgtgttccagtgctgatttcagatcattatgt |
41765780 |
T |
|
| Q |
403 |
tcctccattcagtgatgttttgaattggaaatcgttttctgttgaagtctctgtcaatgatatacctaatttgaagaaaattctaacgagtatatctcca |
502 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
41765781 |
tcctccattcagtgatgttttgaattggaaatcgttttctgttgaagtctctgtcaatgatatacctaatttgaagaaaattctatcgaatatatctcca |
41765880 |
T |
|
| Q |
503 |
agacagtatataagaatgc |
521 |
Q |
| |
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||||||||||||||||||| |
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| T |
41765881 |
agacagtatataagaatgc |
41765899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 249 - 447
Target Start/End: Complemental strand, 26973235 - 26973037
Alignment:
| Q |
249 |
ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagt |
348 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| || |||||||| | |
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| T |
26973235 |
ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaaggat |
26973136 |
T |
|
| Q |
349 |
ggtggaagcaatatacacaggttgtgttccagtgctgatttcagatcattatgttcctccattcagtgatgttttgaattggaaatcgttttctgttga |
447 |
Q |
| |
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|| || ||||| |||||||| |||||||| || || |||||||||||||||||||||||||| |||||||| || |||||||| || ||||||||||| |
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| T |
26973135 |
agttgaggcaatttacacaggctgtgttcctgtacttatttcagatcattatgttcctccatttagtgatgtcttaaattggaagtctttttctgttga |
26973037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 382
Target Start/End: Complemental strand, 47725854 - 47725770
Alignment:
| Q |
298 |
aagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggttgtgttccagtg |
382 |
Q |
| |
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||||||||| ||| | || |||||||| | || || |||||||||||||||||||||||||| || |||| ||||| |||||| |
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| T |
47725854 |
aagcaagttttgtttgtgccctagtggacatgaagtggcaagtccaagagtggtggaagcaatttatgcaggatgtgtcccagtg |
47725770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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