View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_high_12 (Length: 525)
Name: NF3482_high_12
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 20 - 519
Target Start/End: Complemental strand, 26413638 - 26413139
Alignment:
| Q |
20 |
tactcaatagagcatatgtactggcagaattgagtcagtcttctttctgatatcattaggcaatcaatcgagcattcgattattccaatttccctttgta |
119 |
Q |
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| T |
26413638 |
tactcaatagagcatatgtactggcagaattgagtcagtcttctttctgatatcattaggcaatcaatcgagcattcgattattccaatttccctttgta |
26413539 |
T |
|
| Q |
120 |
tcaaccaattccactacagtcatatgttgcagacccgcgggaatctcatccactaatcagaaattttttctgtccacctcaatccaactatgatgccaag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26413538 |
tcaaccaattccactacagtcatatgttgcagacccgcggcaatctcatccactaatcagaaattttttccatccacctcaatccaactatgatgccaag |
26413439 |
T |
|
| Q |
220 |
ctaatgtaaccttatcattaccatgggatctataatcaaattgagcatagttaggccacattctcaccaaagtctttcaaagtgatgagtttgatgcttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26413438 |
ctaatgtaaccttatcattaccatgggatctataatcaaattgagcatagttaggccacgttctcaccaaagtctttcaaagtgatgagtttgatgcttt |
26413339 |
T |
|
| Q |
320 |
tgcttctactatatcatcttcgatattggctctattgtatttgtcttccattactctaaaccataacgtgttgctccccgaatgcagatcccaacccaac |
419 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26413338 |
tgcttctactatatcatcttcgatattggctctactgtatttgtcttccattactctaaaccataacgtgttgctccccgaatgcagctcccaacccaac |
26413239 |
T |
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| Q |
420 |
ttcataaggcacgcctcattttcataacactgagataacgcaaccccaaacctccaatttctttaggttgtataattgtttcccttttcatagcatgaaa |
519 |
Q |
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| T |
26413238 |
ttcataaggcacgcctcattttcataacactgagataacgcaaccccaaacctccaatttctttaggttgtataattgtttcccttttcatagcatgaaa |
26413139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 471 - 525
Target Start/End: Complemental strand, 43624926 - 43624872
Alignment:
| Q |
471 |
ctccaatttctttaggttgtataattgtttcccttttcatagcatgaaattcttc |
525 |
Q |
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| T |
43624926 |
ctccaatttctttaggttgtataattgtttcccttttcatagcatgaaattcttc |
43624872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 1531971 - 1531876
Alignment:
| Q |
41 |
tggcagaattgagtcagtcttctttctgatatcattaggcaatcaatcgagcattcgattattccaatttccctttgtatcaaccaattccactac |
136 |
Q |
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| T |
1531971 |
tggcagaattgagtcaatcttctttctgatatcattaggcagccaatctagaatttgattattccaatttccctttgcatcaaccaattccgctac |
1531876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 1536164 - 1536076
Alignment:
| Q |
192 |
tccacctcaatccaactatgatgc-caagctaatgtaaccttatcattaccatgggatctataatcaaattgagcatagttaggccaca |
279 |
Q |
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|||| ||||||||||||||||||| ||||||||| || | || |||||||| |||||||| |||||||||| ||||||||||||||| |
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| T |
1536164 |
tccatctcaatccaactatgatgcgcaagctaatctatctctaccattaccaatggatctatgatcaaattgaacatagttaggccaca |
1536076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 1536033 - 1535984
Alignment:
| Q |
343 |
tattggctctattgtatttgtcttccattactctaaaccataacgtgttg |
392 |
Q |
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| T |
1536033 |
tattggctctattgtatttcccttccattactctgcaccataacgcgttg |
1535984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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