View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3482_high_21 (Length: 415)
Name: NF3482_high_21
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 40444740 - 40444344
Alignment:
| Q |
1 |
gaacagggcattacagaggagtaaggagaaggccatggggaaaatatgctgcagaaattcgtgatccgacaaggaaaggaagcagggtttggttaggaac |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40444740 |
gaacaaggcattacagaggagtaaggagaaggccatggggaaaatatgctgcagaaattcgtgatccgacaaggaaaggaagcagggtttggttaggaac |
40444641 |
T |
|
| Q |
101 |
atttgacagagagattgatgctgctaaggcttatgattgtgcagctttcagaatgaggggtcagaaagccatattgaattttcctttggaagctggtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40444640 |
atttgacagagagattgatgctgctaaggcttatgattgtgcagctttcagaatgaggggtcagaaagccatattgaattttcctttggaagctggtgaa |
40444541 |
T |
|
| Q |
201 |
gctaatccaaagcctaataattgtggcaggaaaatgagaatacatcaaagatatgatgctacaagttaaagttaagacatgattagtattgccgctattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40444540 |
gctaatccaaagcctaataattgtggcaggaaaaggagaatacatcaaagatatgatgctacaagttaaagttaagacatgattagtattgccgctattt |
40444441 |
T |
|
| Q |
301 |
tataccatattagatttttatattggatctagttcgtctttcataaa-gaatggtctataaaaataaaaataaagtgatggtccgtgtgtacctatc |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40444440 |
tataccatattagatttttatattggatctagttcgtctttcataaaggaatggtctataaaaataaaaataaagtaatggtccgtgtgtacctatc |
40444344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 18652897 - 18653122
Alignment:
| Q |
15 |
agaggagtaaggagaaggccatggggaaaatatgctgcagaaattcgtgatccgacaaggaaaggaagcagggtttggttaggaacatttgacagagaga |
114 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||| || || || | ||||| ||||||||||||| |||||||||||||| ||||||||| | || | |
|
|
| T |
18652897 |
agaggtgtaaggagaaggccatgggggaaatttgcagctgagataagggatccatcaaggaaaggaagtagggtttggttaggtacatttgactgtgaaa |
18652996 |
T |
|
| Q |
115 |
ttgatgctgctaaggcttatgattgtgcagctttcagaatgaggggtcagaaagccatattgaattttcctttggaagctggtgaagctaatccaaagcc |
214 |
Q |
| |
|
|||||||||| || |||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| ||||| |
|
|
| T |
18652997 |
ttgatgctgcaaaagcttatgattctgctgctttcagaatgaggggtcagaaagctatattgaattttcctttggaagctggtgtttgtgatcctaagcc |
18653096 |
T |
|
| Q |
215 |
taataattgtggcaggaaaatgagaa |
240 |
Q |
| |
|
|||| |||||| ||||||| ||||| |
|
|
| T |
18653097 |
aaatagttgtggtaggaaaaggagaa |
18653122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 30641730 - 30641782
Alignment:
| Q |
27 |
agaaggccatggggaaaatatgctgcagaaattcgtgatccgacaaggaaagg |
79 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||| || ||||||||||| |
|
|
| T |
30641730 |
agaagaccatggggaaaatttgcagcagaaattcgtgacccaacaaggaaagg |
30641782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 30710608 - 30710538
Alignment:
| Q |
36 |
tggggaaaatatgctgcagaaattcgtgatccgacaaggaaaggaagcagggtttggttaggaacatttga |
106 |
Q |
| |
|
||||||||||||||||||||||| | ||| | ||||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
30710608 |
tggggaaaatatgctgcagaaatcagagatacaacaagaggaggaagaagggtttggctaggaacatttga |
30710538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 4420282 - 4420232
Alignment:
| Q |
9 |
cattacagaggagtaaggagaaggccatggggaaaatatgctgcagaaatt |
59 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
4420282 |
cattatagaggagtaaggagaaggccatggggaaaatatgcagctgaaatt |
4420232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 38809651 - 38809697
Alignment:
| Q |
15 |
agaggagtaaggagaaggccatggggaaaatatgctgcagaaattcg |
61 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
38809651 |
agaggagtaaggataaggccatggggaaaatgtgcagcagagattcg |
38809697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 38822600 - 38822646
Alignment:
| Q |
15 |
agaggagtaaggagaaggccatggggaaaatatgctgcagaaattcg |
61 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
38822600 |
agaggagtgaggataaggccatggggaaaatttgctgcagagattcg |
38822646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University