View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_high_23 (Length: 411)
Name: NF3482_high_23
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 22735599 - 22735211
Alignment:
| Q |
17 |
aataattgctttatttttgtaactattagcattacgattgacgtgtcattcataatggggtcattgaaactaaggagtagtaacaattcttgttcaacga |
116 |
Q |
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| T |
22735599 |
aataattgctttatttttgtaactattagcattacgattgacgtgtcattcataatggggtcattgaaagtaaggagtagtaacaattcttgttcaaaga |
22735500 |
T |
|
| Q |
117 |
gagaataattttttagcctaacttttgcagaagaaaattacaccacataagacacgaattgtttgtttccaagatatatatttcaatcataa-cnnnnnn |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22735499 |
gagaataattttttagcctaacttttgcagaagaaaattacaccacataggacacgaattgtttgtttccaagatatacatttcaatcataatttttttt |
22735400 |
T |
|
| Q |
216 |
nnnnnaaagatatttcaatcatagaattaaaacatctatttctggattcaaacaagcacattcgttatcccctctcctgcatttcacttttcttttccat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22735399 |
ttttgaaagatatttcaatcatagaattaaaacatctatttctggattcaaacaagcacattcgttatcccctctcctgcatttcacttttcttttccat |
22735300 |
T |
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| Q |
316 |
cctttttcgtacaagacagatgaaatcattgatatttgatacgtactaatagtagattttattaaggaatagtgtgtgtacctatgctt |
404 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22735299 |
cctttttcgtacaagacaaataaaatcattgatatttgatacgtactaatagtagattttattaaggaatagtgtgtgtgcctatgctt |
22735211 |
T |
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