View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_high_25 (Length: 410)
Name: NF3482_high_25
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 402
Target Start/End: Original strand, 41209678 - 41210075
Alignment:
| Q |
9 |
tactactttgttgtttatgatttgattggcttgtttcaagatgtag---gacttggtatatagttgtcattgactagtttgcatagtgcattagtcctaa |
105 |
Q |
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| T |
41209678 |
tactactttgttgtttatgatttgattggcttgtttcaagatgtagtaggacttggtatatagttgtcattgactagtttgcatagtgcattagtcctaa |
41209777 |
T |
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| Q |
106 |
atgcattattatttaagttaatgacaatgaaccagggctttcaattcttggctcattttgtatgcttttaccagtgannnnnnnnn-cccagtgtgttca |
204 |
Q |
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| T |
41209778 |
atgcattattatttaagttaatgacaatgaaccagggctttcaattcttggctcattttgtatgcttttaccagtgattttttttttcccagtgtgttca |
41209877 |
T |
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| Q |
205 |
tacttctgtttatctataccaacttgataattgcttacagattttacttggactgggctatatttatgtgtttttcgtccgctgctcttagataaactac |
304 |
Q |
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| T |
41209878 |
tacttctatttatctataccaacttgataattgcttacagattttacttggactgggctatatttatgtgtttttcgtccgctgctcttagataaactac |
41209977 |
T |
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| Q |
305 |
atctagtcatcctctgaatagttttaaaatgggttttccttgtgatatagatcatcaaccatgtttactaaagcttgccagggctttcaatctctgct |
402 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41209978 |
atctattcatcctctgaatagttttaaaatgggttttccttgtgatatagatcatcaaccatgtttactaaagcttgccagggctttcaatttctgct |
41210075 |
T |
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