View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3482_high_27 (Length: 396)
Name: NF3482_high_27
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_27 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 32600384 - 32600779
Alignment:
| Q |
1 |
ctttattgaagaaattaatacatttatctttcaagaaagtctacttaccttgatttactgcaataacttcagagttgcttatcaattcatacgtgatatt |
100 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32600384 |
ctttatttaagaaattaatacatttttctttcaagaaagtctacttaccttggtttactgcaataacttcagagttgcttatcaattcatacgtgatatt |
32600483 |
T |
|
| Q |
101 |
atccattgcttgaatattacaaccaactaataaaggggcctatttta-----acccaataaaatagttnnnnnnnnncaaattaatgacatattaattac |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
32600484 |
atccattgcttgaatattacaaccaactaataaaggggcctatttaatttaaaccaaataaaatagttaaaaaaaa-caaattaatgacatatatattac |
32600582 |
T |
|
| Q |
196 |
tttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
32600583 |
tttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatt |
32600682 |
T |
|
| Q |
296 |
tccaacttcgagcatatcaggatctaattaatatcaaaacattaatggcccatatgagaaattaatattggagtttgatatacttgtacttatcttaagt |
395 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||||||| | |||| ||| |||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
32600683 |
tccaacttcaagcatatcaggatc----taatatccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagt |
32600778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 32589936 - 32590328
Alignment:
| Q |
1 |
ctttattgaagaaattaatacatttatctttcaagaaagtctacttaccttgatttactgcaataacttcagagttgcttatcaattcatacgtgatatt |
100 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32589936 |
ctttatttaagaaattaatacatttttctttcaagaaagtctacttaccttggtttactgcaataacttcagagttgcttatcaattcatacgtgatatt |
32590035 |
T |
|
| Q |
101 |
atccattgcttgaatattacaaccaactaataaaggggcctatttta-----acccaataaaatagttnnnnnnnnncaaattaatgacatattaattac |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
32590036 |
atccattgcttgaatattacaaccaactaataaaggggcctatttaatttaaaccaaataaaatagttaaaaaaaa-caaattaatgacatatatattac |
32590134 |
T |
|
| Q |
196 |
tttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
32590135 |
tttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatt |
32590234 |
T |
|
| Q |
296 |
tccaacttcgagcatatcaggatctaattaatatcaaaacattaatggcccatatgagaaattaatattggagtttgatatacttgtacttatcttaa |
393 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||||||||| | |||| ||| |||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
32590235 |
tccaacttcaagcatatcaggatc----taatatccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaa |
32590328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 24883774 - 24883687
Alignment:
| Q |
233 |
caccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatct |
320 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
24883774 |
caccttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct |
24883687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 34577699 - 34578091
Alignment:
| Q |
1 |
ctttattgaagaaattaatacattt----atctttcaagaaagtctacttaccttgatttactgcaataacttcagagttgcttatcaattcatacgtga |
96 |
Q |
| |
|
||||||||||||||| ||||||||| |||| | |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
34577699 |
ctttattgaagaaataaatacatttttttatctcttaagaaagtctacttgccttggtttactgcaataacttctgagttgcttatcaattcatatgtgg |
34577798 |
T |
|
| Q |
97 |
tattatccattgcttgaatattacaaccaactaataaaggggcctattttaacccaataaaatagttnnnnnnnnncaaattaatgacatattaattact |
196 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||| |||| | ||||||||| |||| | ||||||||| ||| | |
|
|
| T |
34577799 |
tattatccattgcttgaatattacatccaactaataaaggagcctatttaaaccaataaaaatagttaaacga---caaacttatgacatatatattgca |
34577895 |
T |
|
| Q |
197 |
ttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccattt |
296 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
34577896 |
gtgtctcaacaatatgtatataaaaagtgtttcatgtaccttagctaatgcccaaatgctgaaatgggcacgatattcctctgtggtcatgcctccattt |
34577995 |
T |
|
| Q |
297 |
ccaacttcgagcatatcaggatctaattaatatcaaaacattaatggcccatatgagaaattaatattggagtttgatatacttgtacttatcttaagtt |
396 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||| | |||| ||| |||||||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
34577996 |
ccaacttcaagcatatcaggatc----taatatccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtt |
34578091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 34593533 - 34593630
Alignment:
| Q |
46 |
taccttgatttactgcaataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaactaataaaggggcctat |
143 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||| |||||||| ||| ||||||||||||| |||||| ||||||||| |||||||| |||||| |
|
|
| T |
34593533 |
taccttggtttactgcaataacttccgagttagttattaattcatatgtggtattatccattgcacgaatatcacaaccaaccaataaaggagcctat |
34593630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 34593767 - 34593856
Alignment:
| Q |
234 |
accttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatctaat |
323 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | ||||||||||||||| ||||| |||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
34593767 |
accttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccattcccaacctcaagcatgtcaggatctaat |
34593856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 27532418 - 27532378
Alignment:
| Q |
280 |
ttgtcattcctccatttccaacttcgagcatatcaggatct |
320 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
27532418 |
ttgtcatccctccatttccaacctcaagcatatcaggatct |
27532378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University