View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_high_3 (Length: 953)
Name: NF3482_high_3
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 9 - 572
Target Start/End: Original strand, 28081131 - 28081694
Alignment:
| Q |
9 |
agcagagagacaaagaagagaaaagcttaaccagaaattctatgctctacgtgctgtggttccaaatgtttctaaaatggacaaagcatcgctcctaggc |
108 |
Q |
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| T |
28081131 |
agcagagagacaaagaagagaaaagcttaaccaaaaattctatgctctacgtgctgtggttccaaatgtttctaagatggacaaagcatcgctgctaggc |
28081230 |
T |
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| Q |
109 |
gatgctatttcttatataaatgaattgaaatcgaagctacaagggctggaatcgtcgaaaggcgaattggagatacaattaggtgcaacaaagaaggaat |
208 |
Q |
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| T |
28081231 |
gatgctatatcttatataaacgaattgaaatcgaagctacaagggctggaatcgtcaaaaggtgaattggagaaacaattaggtgcaacaaagaaggaat |
28081330 |
T |
|
| Q |
209 |
tagaacttgttgcaagcaaaaatcaaagtcaaaatccaattccattagataaagaaatggagaaaacaacgagctcaacaagcccttctaagttaattga |
308 |
Q |
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| T |
28081331 |
tagaacttgttgcaagcaaaaatcaaagtcaaaatccaattccattagataaagaaaaggagaaaacaacaagctcaacaagctcttctaagttaattga |
28081430 |
T |
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| Q |
309 |
cttggatattgatgtgaagattatgggttgggatgctatgattaggattcaatgtagcaagaagaatcaccctgcggcgaagttgatggcggcgttgaaa |
408 |
Q |
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| T |
28081431 |
cttggatattgatgtgaagattatgggttgggatgctatgattaggattcaatgcagcaagaagaatcaccctgcggcgaagttgatggcggcgttgaaa |
28081530 |
T |
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| Q |
409 |
gaattagaccttgatgtgaatcatgccagtgtgtctgttgtgaatgatttgatgattcaacaagcttctgttaacatgggaagtagattttacacacaag |
508 |
Q |
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| T |
28081531 |
gaattagaccttgatgtgaatcatgctagtgtgtctgttgtgaatgatttgatgattcaacaagcttctgttaacatgggaagtagattttacacacaag |
28081630 |
T |
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| Q |
509 |
aacagcttttgtctcttctttcttccaaaattggtgatgcacaaggagattaaattttctggaa |
572 |
Q |
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| T |
28081631 |
aacagcttttgtctcttctttcttccaaaattggtgatgcacaaggagattaaattttctggaa |
28081694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 673 - 938
Target Start/End: Original strand, 28081796 - 28082056
Alignment:
| Q |
673 |
attggctatgtaatatggagttgtagaattagggaacatcttttcttcatgtctgctggagaaagaaatgtagtagctaaagtgaactatttttgtttta |
772 |
Q |
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| T |
28081796 |
attggctatgtaatatggagttgtagaattagggaacatcttttcttcatgtctgctggagaaagaaatgtagtagctaaagtgaactatttttgtttta |
28081895 |
T |
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| Q |
773 |
tcattatt--ctgtgttgagtgagtgnnnnnnnnnnnnnnngtttctcaattaccataaatgtgaattcaacttgataagttttatggattattgatatg |
870 |
Q |
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| T |
28081896 |
tcattattatctgtgttgagtgagtgtatatatat------gtttctcaattaccataaatgtgaattcaacttgataagttttatggattattgatatg |
28081989 |
T |
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| Q |
871 |
attatcaactattaaggttatgagatgagtccttcatttctttccaaatcagtttttgtgataccatt |
938 |
Q |
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| T |
28081990 |
attatcaactattaaggttatgagatgagtccttcatttctttccaaatcag-ttttgtgataccatt |
28082056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 9194792 - 9194878
Alignment:
| Q |
9 |
agcagagagacaaagaagagaaaagcttaaccagaaattctatgctctacgtgctgtggttccaaatgtttctaaaatggacaaagc |
95 |
Q |
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| T |
9194792 |
agcagagagacaaaggagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagc |
9194878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 313 - 473
Target Start/End: Original strand, 12886221 - 12886381
Alignment:
| Q |
313 |
gatattgatgtgaagattatgggttgggatgctatgattaggattcaatgtagcaagaagaatcaccctgcggcgaagttgatggcggcgttgaaagaat |
412 |
Q |
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| T |
12886221 |
gatatcgacgtgaagattataggttgggatgcaatgataagggtccaatgcagtaagaaaaaccaccctgcagcgaggttaatggcagcgttaatggagc |
12886320 |
T |
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| Q |
413 |
tagaccttgatgtgaatcatgccagtgtgtctgttgtgaatgatttgatgattcaacaagc |
473 |
Q |
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| T |
12886321 |
ttgacctagaagtgcaccatgccagtgtgtctgtggtaaatgatttgatgatacaacaagc |
12886381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 12885921 - 12886003
Alignment:
| Q |
13 |
gagagacaaagaagagaaaagcttaaccagaaattctatgctctacgtgctgtggttccaaatgtttctaaaatggacaaagc |
95 |
Q |
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||||| ||||||||||| ||||| || |||| ||||||||| || || || || ||||| |||||||| || ||||||||||| |
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| T |
12885921 |
gagaggcaaagaagagagaagctgaatcagagattctatgcacttcgagcggttgttcctaatgtttcaaagatggacaaagc |
12886003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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