View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_high_31 (Length: 348)

Name: NF3482_high_31
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_high_31
NF3482_high_31
[»] chr3 (5 HSPs)
chr3 (19-348)||(28902192-28902521)
chr3 (18-348)||(28925832-28926156)
chr3 (18-338)||(28916603-28916914)
chr3 (18-195)||(28892237-28892414)
chr3 (85-185)||(28935501-28935601)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 28902192 - 28902521
Alignment:
Q  19 tttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28902192 tttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacg 28902291  T
Q  119 cttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcaccactttcccttt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28902292 cttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcactactttcccttt 28902391  T
Q  219 tattattgacttcagcttttcactgcacttctttctcctcaccgatttaactcttgaagtgccaaccaagtcatcacactcagaacccataaagtcaccc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |    
T  28902392 tattattgacttcagcttttcactgcacttctttctcctcaccgatttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagtcactc 28902491  T
Q  319 gcatcagagtcaccagtatcgtcttccccc 348  Q
    |||||||| |||||||||||||||||||||    
T  28902492 gcatcagattcaccagtatcgtcttccccc 28902521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 28925832 - 28926156
Alignment:
Q  18 atttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaac 117  Q
    |||||||||||| ||||   |||||||||||||||||||||||||||||| | |||||||||| |   ||| |||| ||||||| |||| ||| || ||     
T  28925832 atttgcatcacagatta---tcttctttttcttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaa 28925928  T
Q  118 gcttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcaccactttccctt 217  Q
    ||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| | ||||||||||    
T  28925929 gctttggtcgtgtctctaccaatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatcctttttcttatctttcgctactttccctt 28926028  T
Q  218 ttattattgacttcagcttttcactgcacttctttctcctcaccgatttaactcttgaagtgccaaccaagtcatcacactcagaacccataaagtcacc 317  Q
    |||||   || || |||||||   | |||||||||||| |||| |||||||||||||| ||  || | ||||| ||||| ||||| || |||||||  |     
T  28926029 ttatt---gatttgagctttttcgtacacttctttctcttcactgatttaactcttgacgtttcatcgaagtcgtcacaatcagatcctataaagttgct 28926125  T
Q  318 cgcatcagagtcaccagtatcgtcttccccc 348  Q
    | ||||||| ||||||||||| |||||||||    
T  28926126 cacatcagaatcaccagtatcatcttccccc 28926156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 28916603 - 28916914
Alignment:
Q  18 atttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaac 117  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||||||||| | ||||||||||    ||||||| |||||||||||| ||| || ||     
T  28916603 atttgcatcgcagattaccatcttctttttcttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaa 28916702  T
Q  118 gcttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcaccactttccctt 217  Q
    ||||  |||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    |||||||| |    
T  28916703 gctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcttatcttttgttactttcccat 28916802  T
Q  218 ttattattgacttcagcttttcactgcacttctttctcctcaccgatttaactcttgaagtgccaaccaagtcatcacactcagaacccataaagtcacc 317  Q
       ||||||| || | ||| |       |||||||||| | || | |||||||||||| |||||||||||||| ||| | |||||||| ||||||||||     
T  28916803 ---ttattgatttaaccttat------tcttctttctctttactggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcact 28916893  T
Q  318 cgcatcagagtcaccagtatc 338  Q
     |||||||| ||||| |||||    
T  28916894 tgcatcagattcaccggtatc 28916914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 28892237 - 28892414
Alignment:
Q  18 atttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaac 117  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||||| ||||||||||||   |||||||  |||||||||||| ||| || ||     
T  28892237 atttgcatcacagattaccttcttctttttcttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaa 28892336  T
Q  118 gcttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttc 195  Q
    ||||  |||||||||  ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  28892337 gctttggtcgtgtcttcaccaatatttttaagaaaatctacgagacttcttgaaccccatccaacaaaatcttttttc 28892414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 28935501 - 28935601
Alignment:
Q  85 atgatgatccaagcaacatcaagttcagacaacgcttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaa 184  Q
    ||||| ||| ||||||||||| |||| |  || ||||  | ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  28935501 atgattatcgaagcaacatcatgttccgtaaatgcttttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaa 28935600  T
Q  185 a 185  Q
    |    
T  28935601 a 28935601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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