View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_high_38 (Length: 327)
Name: NF3482_high_38
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 35311519 - 35311814
Alignment:
| Q |
22 |
cagcaaagtctgtagaaaaagcagcctcattggtactgtaactcctaaccaaatcatcttgagacccattattgaaaagaacttgatcagaatggaatag |
121 |
Q |
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| T |
35311519 |
cagcaaagtctgtagaaaaagcagcctcattggtactataactcctaaccaaattatcttgagacccattattgaaaaggacttgatcagaatggaatag |
35311618 |
T |
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| Q |
122 |
acctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcattatcactagaaaaa |
221 |
Q |
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| T |
35311619 |
acctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcattgtcactagaaaaa |
35311718 |
T |
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| Q |
222 |
gaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacgatcggcactctccttggcctatg |
317 |
Q |
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| T |
35311719 |
gaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacaatcgacactctccttggcctatg |
35311814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 317
Target Start/End: Original strand, 35307178 - 35307468
Alignment:
| Q |
24 |
gcaaagtctgtagaaaaagcagcctcattggtactgtaactcctaaccaaatcatcttgagacccattattgaaaagaacttgatcagaatggaatagac |
123 |
Q |
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| T |
35307178 |
gcaaagtctctagaaaaagtagcaccattggtactataactcctaaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagac |
35307277 |
T |
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| Q |
124 |
ctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcattatcactagaaaaaga |
223 |
Q |
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| T |
35307278 |
ctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtc---accaccagaaagagg |
35307374 |
T |
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| Q |
224 |
acagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacgatcggcactctccttggcctatg |
317 |
Q |
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| T |
35307375 |
acaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
35307468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 49 - 317
Target Start/End: Original strand, 35322204 - 35322469
Alignment:
| Q |
49 |
cattggtactgtaactcctaaccaaatcatcttgagacccattattgaaaagaacttgatcagaatggaatagacctttgcttgcaacaaggtttttata |
148 |
Q |
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| T |
35322204 |
cattggtactataactcctaaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttata |
35322303 |
T |
|
| Q |
149 |
ataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcattatcactagaaaaagaacagttggattttcttaaggttgcg |
248 |
Q |
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| T |
35322304 |
gtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgctaaattggtgtc---accaccagaaagaggacaatttaatttccttaaggttgca |
35322400 |
T |
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| Q |
249 |
aagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacgatcggcactctccttggcctatg |
317 |
Q |
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| T |
35322401 |
aagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
35322469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 92 - 292
Target Start/End: Original strand, 35289448 - 35289645
Alignment:
| Q |
92 |
attgaaaagaacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
191 |
Q |
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|||||||||| ||||||||||||| | || ||||| | |||||||||| ||||| ||||||||||||||| | ||||| || || |||||| ||| |
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| T |
35289448 |
attgaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggt |
35289547 |
T |
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| Q |
192 |
gctaaattggtgtcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
291 |
Q |
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| T |
35289548 |
gccaaatttatgtcac---caccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctga |
35289644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 292
Target Start/End: Original strand, 35275336 - 35275533
Alignment:
| Q |
92 |
attgaaaagaacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
191 |
Q |
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|||||||||||||||||||||||| | |||||||| | |||| ||||| |||||||||||||||||||| | |||||||||| || ||||| ||| |
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| T |
35275336 |
attgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggt |
35275435 |
T |
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| Q |
192 |
gctaaattggtgtcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
291 |
Q |
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|||||||||||||| | ||| ||| || || || |||||||||||| || |||||| |||||||||||| |||||||| ||||||| |||||| |
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| T |
35275436 |
gctaaattggtgtc---accaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctga |
35275532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 317
Target Start/End: Original strand, 35280223 - 35280325
Alignment:
| Q |
215 |
agaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacgatcggcactctccttggcct |
314 |
Q |
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||||| || |||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||| || | || ||| |||||||| |
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| T |
35280223 |
agaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattctgcttggcct |
35280322 |
T |
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| Q |
315 |
atg |
317 |
Q |
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||| |
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| T |
35280323 |
atg |
35280325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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