View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_high_4 (Length: 820)
Name: NF3482_high_4
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 685; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 65 - 809
Target Start/End: Complemental strand, 38467739 - 38467004
Alignment:
| Q |
65 |
acaccgcttactctgttaactaacaccagcaaatagatagatcgacttgacaatgttttgcaatttcaagagctaacttagagtttcgataaagtgaatt |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38467739 |
acaccgcttactctgttaactaacaccagcaaatagatagatcgacttgacaatgttttgcaatttcaagaactaacttagagtttcgataaagtgaatt |
38467640 |
T |
|
| Q |
165 |
agactaacttgatacaaccttacaatttcattgagcaaagtgagattttaatcattgatattcattcatatgagagacatgaatattcacaatagactct |
264 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38467639 |
agactaacttgacacacccttacaatttcattgagcaaagtgagattttaatcattgatattcattcatatgagagacatgaatattcacaatagactct |
38467540 |
T |
|
| Q |
265 |
tacttacaacatagcattatatgcaatttccgtatgacttacgcggataaagcaacaaaaaaggtactctataattattaataaccatccctcttgtctt |
364 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38467539 |
tacttacaacatagcattatatgcaatttccatatgacttacgcggataaagcaacaaaaaaggtactctataattattaataaccatccctcttgtctt |
38467440 |
T |
|
| Q |
365 |
gttcctcagcttccttgttggctgcttgtacagacttgaaccacaagaaagcctgaattgaataacattaactcattagctcacaaaagattcaactaaa |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38467439 |
gttcctcagcttccttgttggctgcttgtacagacttgaaccacaagaaagcctgaattgaataacatcaactcattagctcacaaaagattcaactaaa |
38467340 |
T |
|
| Q |
465 |
atgccattcaattcgtgtaaatcaataactatctcatatcaacattgttgagaagcatggttgagtctgactaagagaaataaattcagagaatttaaaa |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38467339 |
atgccattcaattcgtgtaaatcaataactatctcatatcaacattgttgagaagcatggttgagtctgactaagagaaataaattcagagaatttaaaa |
38467240 |
T |
|
| Q |
565 |
atagtagaatgaagaatatgattcaattagggtaggatacatctttatatagcgatcccaagttaactaacataacaaatttccacctaatcataactaa |
664 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38467239 |
atagtagaatgaagaatatgattcaattagggtaggatacatctttatatagtgatcccaagttaactaacataacaaatttccacctaatcataactaa |
38467140 |
T |
|
| Q |
665 |
cttcggattacattaaacaatttctaacaaatctcctaccatatctaacaattattgcagtttgcatgaactatggacattttttaattgactaatgtca |
764 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38467139 |
cctcggattacattaaacaatttctaacaaatctcctaccatatctaacaattattgcagtttgcatgaactatggacattttttaattgactaatgtca |
38467040 |
T |
|
| Q |
765 |
acgagtcacacatcggacagaaatcgtggtttctgaggtgatgat |
809 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |
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|
| T |
38467039 |
acgagtc---------acagaaatcgtggtttctgaggtgatgat |
38467004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 38468405 - 38468266
Alignment:
| Q |
156 |
aagtgaattagactaacttgatacaaccttacaatttcattgagcaaagtgagattttaatcattgatattcattcatatgagagacatgaatattcaca |
255 |
Q |
| |
|
||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38468405 |
aagtgaattagactaacttgacacaccctcacaatttcattgagcaaattgagattttaatcattgatattcattcatatgagaaacatgaatattcaca |
38468306 |
T |
|
| Q |
256 |
atagactcttacttacaacatagcattatatgcaatttcc |
295 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
38468305 |
atagactcttacttacaacataatattatatgcaatttcc |
38468266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 38467828 - 38467779
Alignment:
| Q |
18 |
aaaagagttaggggcgctaatgaagcacgttaagtatttggttgtgcaca |
67 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
38467828 |
aaaagagttaggggcgctaatgaagcacgctaagtatttggttgtgcaca |
38467779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 645
Target Start/End: Original strand, 25953329 - 25953411
Alignment:
| Q |
563 |
aaatagtagaatgaagaatatgattcaattagggtaggatacatctttatatagcgatcccaagttaactaacataacaaatt |
645 |
Q |
| |
|
||||| |||||||||||||||||| || |||||||||||||| |||||||| ||| |||||||||||||||||||||| |
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| T |
25953329 |
aaataatagaatgaagaatatgatataactagggtaggatacacttttatataataatcttaagttaactaacataacaaatt |
25953411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 632 - 699
Target Start/End: Original strand, 16787651 - 16787718
Alignment:
| Q |
632 |
taacataacaaatttccacctaatcataactaacttcggattacattaaacaatttctaacaaatctc |
699 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| | ||| ||||||| ||||||||||||||| |
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| T |
16787651 |
taacataacaaattttcacctaatcataattaacttgaaactaccttaaacagtttctaacaaatctc |
16787718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 668
Target Start/End: Original strand, 25953526 - 25953565
Alignment:
| Q |
629 |
aactaacataacaaatttccacctaatcataactaacttc |
668 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| |
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| T |
25953526 |
aactaacctaacaaatttccacctaatcatatctaacttc |
25953565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 622 - 668
Target Start/End: Original strand, 46959022 - 46959068
Alignment:
| Q |
622 |
ccaagttaactaacataacaaatttccacctaatcataactaacttc |
668 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||||||||||||||| |
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| T |
46959022 |
ccaaggtaactaatctaacaaacttccacctaatcataactaacttc |
46959068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 576 - 668
Target Start/End: Original strand, 29611930 - 29612022
Alignment:
| Q |
576 |
aagaatatgattcaattagggtaggatacatctttatatagcgatcccaagttaactaacataacaaatttccacctaatcataactaacttc |
668 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||||| ||| ||||| |||||||||| ||||||| |
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|
| T |
29611930 |
aagaatatgatacaattacggtaggatacacctttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaacttc |
29612022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 624 - 668
Target Start/End: Original strand, 29609940 - 29609984
Alignment:
| Q |
624 |
aagttaactaacataacaaatttccacctaatcataactaacttc |
668 |
Q |
| |
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||||||||| ||||||||||||| |||||||||| |||||||||| |
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|
| T |
29609940 |
aagttaactgacataacaaattttcacctaatcacaactaacttc |
29609984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 576 - 668
Target Start/End: Original strand, 17236561 - 17236653
Alignment:
| Q |
576 |
aagaatatgattcaattagggtaggatacatctttatatagcgatcccaagttaactaacataacaaatttccacctaatcataactaacttc |
668 |
Q |
| |
|
||||||||||| | ||||| ||| |||| | ||||||| || ||||||||| |||||||||||| || |||||||||||||||||||||||| |
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|
| T |
17236561 |
aagaatatgatacgattagagtaagatatacctttatacagtgatcccaaggtaactaacataattaacttccacctaatcataactaacttc |
17236653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 660
Target Start/End: Original strand, 17236506 - 17236556
Alignment:
| Q |
610 |
tatatagcgatcccaagttaactaacataacaaatttccacctaatcataa |
660 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| || ||||||||||| |||| |
|
|
| T |
17236506 |
tatatagtgatcccaaggtaactaacataactaacttccacctaataataa |
17236556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 615
Target Start/End: Complemental strand, 3593363 - 3593305
Alignment:
| Q |
557 |
atttaaaaatagtagaatgaagaatatgattcaattagggtaggatacatctttatata |
615 |
Q |
| |
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|||||||| || |||||||||||||||||| ||| || ||||||||||| ||||||||| |
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| T |
3593363 |
atttaaaattaatagaatgaagaatatgatacaaataaggtaggatacacctttatata |
3593305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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