View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_high_43 (Length: 305)

Name: NF3482_high_43
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_high_43
NF3482_high_43
[»] chr3 (2 HSPs)
chr3 (8-287)||(36743974-36744258)
chr3 (245-277)||(35722340-35722372)
[»] chr8 (8 HSPs)
chr8 (240-285)||(6392095-6392140)
chr8 (240-283)||(6264930-6264973)
chr8 (240-285)||(6364472-6364517)
chr8 (240-281)||(6411259-6411300)
chr8 (240-285)||(7460671-7460716)
chr8 (230-268)||(6458252-6458290)
chr8 (240-285)||(6353599-6353644)
chr8 (240-285)||(6425289-6425334)
[»] chr2 (1 HSPs)
chr2 (234-283)||(42694385-42694434)
[»] chr1 (1 HSPs)
chr1 (131-253)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 36744258 - 36743974
Alignment:
Q  8 gcagaacctgtgaattaatgaatcatcatataaataatatatattcattagtaaaaagtttcaattatatattactaagaaaa-----agttgagagcaa 102  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||    
T  36744258 gcagaatctgtaaattaatgaatcatcatataaataatatatattcattagtaaaaagtttcaattatatattactaagaaaagaaaaagttgagagcaa 36744159  T
Q  103 ttaacgtagagattaactaactaactaactaacctgttttggtcggttttctgcaggttcttcccctgcgaggatagggaaatttagaagaacctccgag 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36744158 ttaacgtagagattaactaactaactaactaacctgttttggtcggttttctgcaggttcttcccctacgaggatagggaaatttagaagaacctccgag 36744059  T
Q  203 aatcggacgagcaaggtctcgactcttatctggatttcccaaatcattgtaaacatcataatcatagattctgtcccattcctca 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744058 aatcggacgagcaaggtctcgactcttatctggatttcccaaatcattgtaaacatcataatcatagattctgtcccattcctca 36743974  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 35722372 - 35722340
Alignment:
Q  245 atcattgtaaacatcataatcatagattctgtc 277  Q
    ||||||||| |||||||||||||||||||||||    
T  35722372 atcattgtagacatcataatcatagattctgtc 35722340  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 6392095 - 6392140
Alignment:
Q  240 cccaaatcattgtaaacatcataatcatagattctgtcccattcct 285  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||    
T  6392095 cccaaatcattgtagacatcataatcatatattctgtcccattcct 6392140  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 6264930 - 6264973
Alignment:
Q  240 cccaaatcattgtaaacatcataatcatagattctgtcccattc 283  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  6264930 cccaaatcattgtaaacatcataatcataaactctgtcccattc 6264973  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 6364472 - 6364517
Alignment:
Q  240 cccaaatcattgtaaacatcataatcatagattctgtcccattcct 285  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||    
T  6364472 cccaaatcattgtagacatcataatcatatattctttcccattcct 6364517  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 6411259 - 6411300
Alignment:
Q  240 cccaaatcattgtaaacatcataatcatagattctgtcccat 281  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  6411259 cccaaatcattgtagacatcataatcatatattctgtcccat 6411300  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 7460671 - 7460716
Alignment:
Q  240 cccaaatcattgtaaacatcataatcatagattctgtcccattcct 285  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||    
T  7460671 cccaagtcattgtagacatcataatcatatattctgtcccattcct 7460716  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 6458252 - 6458290
Alignment:
Q  230 atctggatttcccaaatcattgtaaacatcataatcata 268  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  6458252 atctggatttcccaaatcattataaatatcataatcata 6458290  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 6353599 - 6353644
Alignment:
Q  240 cccaaatcattgtaaacatcataatcatagattctgtcccattcct 285  Q
    |||||||||||||| ||||| |||||||| ||||| ||||||||||    
T  6353599 cccaaatcattgtagacatcgtaatcatatattctttcccattcct 6353644  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 6425289 - 6425334
Alignment:
Q  240 cccaaatcattgtaaacatcataatcatagattctgtcccattcct 285  Q
    |||||||||||||| ||||| ||||||||||| || ||||||||||    
T  6425289 cccaaatcattgtagacatcgtaatcatagatcctttcccattcct 6425334  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 42694385 - 42694434
Alignment:
Q  234 ggatttcccaaatcattgtaaacatcataatcatagattctgtcccattc 283  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  42694385 ggatttcctaaatcattgtagacatcataatcatagattctttcccattc 42694434  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 36923701 - 36923579
Alignment:
Q  131 ctaacctgttttggtcggttttctgcaggttcttcccctgcgaggatagggaaatttagaagaacctccgagaatcggacgagcaaggtctcgactctta 230  Q
    |||||||| |||||  |||| |||||  ||||||||||||||||| || ||| ||| || ||| ||||| ||||| ||||||| | | ||  |||  |||    
T  36923701 ctaacctgatttggcaggttctctgccagttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagaccttta 36923602  T
Q  231 tctggatttcccaaatcattgta 253  Q
    || ||||||||||||||||||||    
T  36923601 tcaggatttcccaaatcattgta 36923579  T

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