View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_high_6 (Length: 808)

Name: NF3482_high_6
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_high_6
NF3482_high_6
[»] chr7 (8 HSPs)
chr7 (19-368)||(44953750-44954096)
chr7 (21-96)||(44994770-44994845)
chr7 (583-623)||(5768058-5768098)
chr7 (583-623)||(25419569-25419609)
chr7 (583-623)||(39066864-39066904)
chr7 (583-623)||(47233816-47233856)
chr7 (633-663)||(5767987-5768017)
chr7 (633-663)||(25419498-25419528)
[»] chr2 (9 HSPs)
chr2 (439-568)||(29455275-29455407)
chr2 (583-663)||(29455477-29455557)
chr2 (583-663)||(43564267-43564347)
chr2 (523-568)||(43564151-43564196)
chr2 (583-623)||(7574085-7574125)
chr2 (583-623)||(41646702-41646742)
chr2 (583-623)||(16668680-16668720)
chr2 (633-663)||(7574014-7574044)
chr2 (633-663)||(16668609-16668639)
[»] chr8 (5 HSPs)
chr8 (583-663)||(918909-918989)
chr8 (583-623)||(8150485-8150525)
chr8 (583-623)||(10186462-10186502)
chr8 (583-623)||(11428136-11428176)
chr8 (531-564)||(919075-919108)
[»] scaffold0516 (1 HSPs)
scaffold0516 (583-623)||(3355-3395)
[»] chr6 (3 HSPs)
chr6 (583-623)||(13433447-13433487)
chr6 (583-623)||(16712103-16712143)
chr6 (633-663)||(13433376-13433406)
[»] chr5 (4 HSPs)
chr5 (583-623)||(36991151-36991191)
chr5 (583-623)||(21605061-21605101)
chr5 (583-619)||(37301986-37302022)
chr5 (633-663)||(36991232-36991262)
[»] chr4 (12 HSPs)
chr4 (583-623)||(2504995-2505035)
chr4 (583-623)||(46092411-46092451)
chr4 (583-623)||(46134936-46134976)
chr4 (583-623)||(53830499-53830539)
chr4 (583-623)||(20036391-20036431)
chr4 (583-623)||(34737793-34737833)
chr4 (583-623)||(5430821-5430861)
chr4 (633-663)||(2504924-2504954)
chr4 (633-663)||(34737725-34737755)
chr4 (633-663)||(46092492-46092522)
chr4 (633-663)||(46135017-46135047)
chr4 (633-663)||(53830428-53830458)
[»] chr3 (5 HSPs)
chr3 (583-623)||(35870451-35870491)
chr3 (583-623)||(48266372-48266412)
chr3 (583-623)||(52349834-52349874)
chr3 (633-663)||(48266453-48266483)
chr3 (633-663)||(52349915-52349945)
[»] chr1 (6 HSPs)
chr1 (583-623)||(13786337-13786377)
chr1 (583-623)||(22912522-22912562)
chr1 (583-623)||(25807766-25807806)
chr1 (583-623)||(23726019-23726058)
chr1 (633-663)||(13786418-13786448)
chr1 (633-662)||(22912455-22912484)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 44953750 - 44954096
Alignment:
Q  19 aatttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtatacaaaaattgaagtataccgaag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44953750 aatttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagattaagtatacaaaaattgaagtataccgaag 44953849  T
Q  119 attgattgacatgagataaacataaaatttgagattccatgccaaatgataatgttcaatattaatagagttttataattgttttatcattcacaagctc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44953850 attgattgacatgagataaacataaaatttgagattccatgccaaatgataatgttcaatattaatagagttttataattgttttatcattcacaagctc 44953949  T
Q  219 ccatctatgttgttgttgtcgtcattgtgattaatgtttgactcttttttatgttatgtgaataaaattactcctctaattcaatctgatacaatgatat 318  Q
     ||||||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  44953950 tcatcta---tgttgttgtcgtcattgtgattaatgtttgactcttttgtatgttatgtgaataaaatacctcctctaattcaatctgatacaatgatat 44954046  T
Q  319 ttgaagggttgttcgatattgaacatgagttgtcatatctcttaagttag 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44954047 ttgaagggttgttcgatattgaacatgagttgtcatatctcttaagttag 44954096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 44994845 - 44994770
Alignment:
Q  21 tttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtata 96  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  44994845 tttatgtactactacatatgtcaatttctgacaaattgttgatatatttcaaacaggttgaaatagatgaagtata 44994770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 5768098 - 5768058
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5768098 gttacattttaaaattattcatattcttaatcaatcctctt 5768058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 25419609 - 25419569
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25419609 gttacattttaaaattattcatattcttaatcaatcctctt 25419569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 39066904 - 39066864
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39066904 gttacattttaaaattattcatattcttaatcaatcctctt 39066864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 47233856 - 47233816
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47233856 gttacattttaaaattattcatattcttaatcaatcctctt 47233816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Complemental strand, 5768017 - 5767987
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  5768017 ctaagcttatatatatgttgcttatgttatc 5767987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Complemental strand, 25419528 - 25419498
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  25419528 ctaagcttatatatatgttgcttatgttatc 25419498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 1e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 439 - 568
Target Start/End: Original strand, 29455275 - 29455407
Alignment:
Q  439 gtgtctcctaatattgtcagttacacataattacaaatacatg--tgcggctgacatttgtaactcccatttacaaccc-nnnnnnntcatttccttaat 535  Q
    |||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||        |||||||||||||    
T  29455275 gtgtctcctaatattgtcagttacacatatatacaaatacatgtatgcggctgacatttgtaactcccatttacaacccaaaaaaaatcatttccttaat 29455374  T
Q  536 ttttgattaataattgacaacacttattatatg 568  Q
    ||||||||||||||||| |||||||||||||||    
T  29455375 ttttgattaataattgataacacttattatatg 29455407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 583 - 663
Target Start/End: Original strand, 29455477 - 29455557
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatc 663  Q
    ||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||    
T  29455477 gttacattttaaaattattcatattcttaattaatcctcttcatttttttctaagcttatatatatgttgcttatgttatc 29455557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 583 - 663
Target Start/End: Original strand, 43564267 - 43564347
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||    
T  43564267 gttacattttaaaattattcatattcttaatcaatccttttcatttttttctaagcttatatatatgttgcttatgttatc 43564347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 568
Target Start/End: Original strand, 43564151 - 43564196
Alignment:
Q  523 tcatttccttaatttttgattaataattgacaacacttattatatg 568  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  43564151 tcattaccttaatttttgattaataattgacaacacttattatatg 43564196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 7574125 - 7574085
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7574125 gttacattttaaaattattcatattcttaatcaatcctctt 7574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 41646742 - 41646702
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41646742 gttacattttaaaattattcatattcttaatcaatcctctt 41646702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 16668720 - 16668680
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  16668720 gttacattttaaaattattcatattcttgatcaatcctctt 16668680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Complemental strand, 7574044 - 7574014
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  7574044 ctaagcttatatatatgttgcttatgttatc 7574014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Complemental strand, 16668639 - 16668609
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  16668639 ctaagcttatatatatgttgcttatgttatc 16668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 583 - 663
Target Start/End: Complemental strand, 918989 - 918909
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||| |||||||||    
T  918989 gttacattttaaaattattcatattcttaatcaatcctcttcatttttttctaagcttatatatatattgcatatgttatc 918909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 8150525 - 8150485
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  8150525 gttacattttaaaattattcatattcttaatcagtcctctt 8150485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 10186462 - 10186502
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  10186462 gttacattttaaaattgttcatattcttaatcaatcctctt 10186502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 11428176 - 11428136
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  11428176 gttacattttaaaattattcatattcttagtcaatcatctt 11428136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 564
Target Start/End: Complemental strand, 919108 - 919075
Alignment:
Q  531 ttaatttttgattaataattgacaacacttatta 564  Q
    ||||||||||||| ||||||||||||||||||||    
T  919108 ttaatttttgattgataattgacaacacttatta 919075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 3355 - 3395
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3355 gttacattttaaaattattcatattcttaatcaatcctctt 3395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 13433487 - 13433447
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13433487 gttacattttaaaattattcatattcttaatcaatcctctt 13433447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 16712143 - 16712103
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  16712143 gttacattttaaaattattcatattcttaatcaatcatctt 16712103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Complemental strand, 13433406 - 13433376
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  13433406 ctaagcttatatatatgttgcttatgttatc 13433376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 36991151 - 36991191
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36991151 gttacattttaaaattattcatattcttaatcaatcctctt 36991191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 21605101 - 21605061
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21605101 gttaaattttaaaattattcatattcttaatcaatcctctt 21605061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 619
Target Start/End: Complemental strand, 37302022 - 37301986
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcc 619  Q
    |||||||||||||||||||||||||||||||||||||    
T  37302022 gttacattttaaaattattcatattcttaatcaatcc 37301986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Original strand, 36991232 - 36991262
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  36991232 ctaagcttatatatatgttgcttatgttatc 36991262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 2505035 - 2504995
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2505035 gttacattttaaaattattcatattcttaatcaatcctctt 2504995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 46092411 - 46092451
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46092411 gttacattttaaaattattcatattcttaatcaatcctctt 46092451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 46134936 - 46134976
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46134936 gttacattttaaaattattcatattcttaatcaatcctctt 46134976  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 53830539 - 53830499
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53830539 gttacattttaaaattattcatattcttaatcaatcctctt 53830499  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 20036391 - 20036431
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  20036391 gttacattttaaaattaatcatattcttaatcaatcctctt 20036431  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 34737833 - 34737793
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  34737833 gttacattttaaaattattcatattcttgatcaatcctctt 34737793  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 5430821 - 5430861
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  5430821 gttacattttaaaattattcatattcttagtcaatcatctt 5430861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Complemental strand, 2504954 - 2504924
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  2504954 ctaagcttatatatatgttgcttatgttatc 2504924  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Complemental strand, 34737755 - 34737725
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  34737755 ctaagcttatatatatgttgcttatgttatc 34737725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Original strand, 46092492 - 46092522
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  46092492 ctaagcttatatatatgttgcttatgttatc 46092522  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Original strand, 46135017 - 46135047
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  46135017 ctaagcttatatatatgttgcttatgttatc 46135047  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Complemental strand, 53830458 - 53830428
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  53830458 ctaagcttatatatatgttgcttatgttatc 53830428  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 35870451 - 35870491
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35870451 gttacattttaaaattattcatattcttaatcaatcctctt 35870491  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 48266372 - 48266412
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48266372 gttacattttaaaattattcatattcttaatcaatcctctt 48266412  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 52349834 - 52349874
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  52349834 gttacattttaaaattatttatattcttaatcaatcctctt 52349874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Original strand, 48266453 - 48266483
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  48266453 ctaagcttatatatatgttgcttatgttatc 48266483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Original strand, 52349915 - 52349945
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  52349915 ctaagcttatatatatgttgcttatgttatc 52349945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 13786337 - 13786377
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13786337 gttacattttaaaattattcatattcttaatcaatcctctt 13786377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 22912562 - 22912522
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22912562 gttacattttaaaattattcatattcttaatcaatcctctt 22912522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 25807806 - 25807766
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25807806 gttacattttaaaattattcatattcttaatcaatcctctt 25807766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 583 - 623
Target Start/End: Complemental strand, 23726058 - 23726019
Alignment:
Q  583 gttacattttaaaattattcatattcttaatcaatcctctt 623  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23726058 gttacattttaaa-ttattcatattcttaatcaatcctctt 23726019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 663
Target Start/End: Original strand, 13786418 - 13786448
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttatc 663  Q
    |||||||||||||||||||||||||||||||    
T  13786418 ctaagcttatatatatgttgcttatgttatc 13786448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 662
Target Start/End: Complemental strand, 22912484 - 22912455
Alignment:
Q  633 ctaagcttatatatatgttgcttatgttat 662  Q
    ||||||||||||||||||||||||||||||    
T  22912484 ctaagcttatatatatgttgcttatgttat 22912455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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