View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_high_71 (Length: 237)
Name: NF3482_high_71
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_71 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 31704249 - 31704022
Alignment:
| Q |
10 |
catcatcaacatatcaaagaagagttgggtttcaactgattctttaatgctttccttctcactttccaacaccatgtctatcacaatcactttcccttgt |
109 |
Q |
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| T |
31704249 |
catcatcaacatatcaaagaagagttgtgtttcaactgattcattaatgctttccttctcactttccaacaccatgtctatcacaatcactttcccttgt |
31704150 |
T |
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| Q |
110 |
ttacctttctttgctattgcatctttacaattctttaatattttcacacattcctcatcattccaatcatgcaatatccactgcaattttattagacttc |
209 |
Q |
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| T |
31704149 |
ttacctttctttgatattgcatccttgcaattctttaatattttcacacattcctcgtcattccaatcatgcaatatccactgcaattttattagacttc |
31704050 |
T |
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| Q |
210 |
gattgagttactaaagaaacatatagat |
237 |
Q |
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| T |
31704049 |
gattgagttactaaagaaacatatagat |
31704022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 31684934 - 31684746
Alignment:
| Q |
10 |
catcatcaacatatcaaagaagagttgggtttcaactgattctttaatgctttccttctcactttccaacaccatgtctatcacaatcactttcccttgt |
109 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||| |||||| || |||||||||| || || ||| |||| | | || ||| ||||||| | |
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| T |
31684934 |
catcataaacatatcaaagaagagttgtgtttcaactgattcattaatgtttcccttctcactgtcgaaaaccttgtcgaagataaccaccttcccttct |
31684835 |
T |
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| Q |
110 |
ttacctttctttgctattgcatctttacaattctttaatattttcacacattcctcatcattccaatcatgcaatatccactgcaattt |
198 |
Q |
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| T |
31684834 |
ttacctttctttgatattgcatccttacaattctttaatatctttacacattcctcgtcattccaatcatgcaatatccactgtaattt |
31684746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 31712659 - 31712440
Alignment:
| Q |
10 |
catcatcaacatatcaaagaagagttgggtttcaactgattctttaatgctttccttctcactttccaacaccatgtctatcacaatcactttcccttgt |
109 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||| || | ||||||||| || |||||||||||||| | || || || |||| | |
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| T |
31712659 |
catcatcaacatatcaaagaagagttgtgtttcaactgattcattattgtctcccttctcacaatctaacaccatgtctatgataactacctttccttct |
31712560 |
T |
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| Q |
110 |
ttacctttctttgctattgcatctttacaattctttaatattttcacacattcctcatcattccaatcatgcaatatccactgcaattttatt-agactt |
208 |
Q |
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| T |
31712559 |
ttacctttctttgatattgcatccttacaattctttaaaatcttcaaacattgctcgtcgttccaatcatgcaatatccactgcaatttcattaagactt |
31712460 |
T |
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| Q |
209 |
cgattgagttactaaagaaa |
228 |
Q |
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| T |
31712459 |
tgtttgagttatgaaagaaa |
31712440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 31735605 - 31735386
Alignment:
| Q |
10 |
catcatcaacatatcaaagaagagttgggtttcaactgattctttaatgctttccttctcactttccaacaccatgtctatcacaatcactttcccttgt |
109 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||| ||| || | ||||||||| || |||||||||||||| | || || || |||| | |
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| T |
31735605 |
catcatcaacatatcaaagaagagttttgtttcaaccgattcattattgtctcccttctcacaatctaacaccatgtctatgataactacctttccttct |
31735506 |
T |
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| Q |
110 |
ttacctttctttgctattgcatctttacaattctttaatattttcacacattcctcatcattccaatcatgcaatatccactgcaattttatt-agactt |
208 |
Q |
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| T |
31735505 |
ttacctttctttgatattgcatccttacaattctttaatatcttcacacattcttcgtcattccagtcatgcaatatccactacaatttcattaagactt |
31735406 |
T |
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| Q |
209 |
cgattgagttactaaagaaa |
228 |
Q |
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| T |
31735405 |
tgtttgagttatgaaagaaa |
31735386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 31715583 - 31715402
Alignment:
| Q |
10 |
catcatcaacatatcaaagaagagttgggtttcaactgattctttaatgctttccttctcactttccaacaccatgtctatcacaatcactttcccttgt |
109 |
Q |
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|||||| | |||||||||||||||||| |||| | | ||||| | || || ||||||| | |||| |||||||||||| | |||||| || |||| | |
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| T |
31715583 |
catcatgagcatatcaaagaagagttgtgttttagccgattc---actgtttcccttctctttctccaccaccatgtctatgataatcacctttccttct |
31715487 |
T |
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| Q |
110 |
ttacctttctttgctattgcatctttacaattctttaatattttcacacattcctcatcattccaatcatgcaatatccactgca |
194 |
Q |
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| T |
31715486 |
ttacctttcttcgctattgcatccttacaattccttaatatctttacgcattcctcatcattccaatcatgcaatatccactgca |
31715402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 30571011 - 30570921
Alignment:
| Q |
95 |
atcactttcccttgtttacctttctttgctattgcatctttacaattctttaatattttcacacattcctcatcattccaatcatgcaata |
185 |
Q |
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| T |
30571011 |
atcactttcccttctttacctttgtttcctattgcttccttgcatttctttagtattttcaagcattcctcatcgttccagtcatgtaata |
30570921 |
T |
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