View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_high_73 (Length: 236)

Name: NF3482_high_73
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_high_73
NF3482_high_73
[»] chr5 (6 HSPs)
chr5 (11-222)||(31702993-31703224)
chr5 (136-221)||(31734834-31734919)
chr5 (137-215)||(31684461-31684539)
chr5 (135-222)||(31711427-31711514)
chr5 (55-110)||(3584685-3584740)
chr5 (136-202)||(31714416-31714482)
[»] chr4 (3 HSPs)
chr4 (56-95)||(5795410-5795449)
chr4 (53-90)||(51954155-51954192)
chr4 (56-92)||(4249216-4249252)
[»] chr1 (4 HSPs)
chr1 (56-94)||(19940873-19940911)
chr1 (56-95)||(36428748-36428787)
chr1 (53-95)||(20203901-20203943)
chr1 (56-112)||(4824990-4825046)
[»] chr2 (1 HSPs)
chr2 (56-96)||(40416391-40416431)
[»] chr3 (2 HSPs)
chr3 (53-95)||(10828731-10828773)
chr3 (56-110)||(44069779-44069833)
[»] chr7 (3 HSPs)
chr7 (58-95)||(5579237-5579274)
chr7 (56-92)||(29385744-29385780)
chr7 (53-93)||(31835230-31835270)
[»] scaffold0180 (1 HSPs)
scaffold0180 (56-96)||(19963-20003)
[»] scaffold0172 (1 HSPs)
scaffold0172 (56-92)||(15778-15814)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 31703224 - 31702993
Alignment:
Q  11 aagaagttaaattattagctcacccaaattaattggcacggtgataatcaaacctgagaccttaaggaggagcatactccaaggtttcgaggcaacacca 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||| | | |||||||||||||||||||||    
T  31703224 aagaagttaaattattagctcagccaaattaattggcacggtgataatcaaacctgaaaccttgagaaggagcacatttcaaggtttcgaggcaacacca 31703125  T
Q  111 tcgtaccattccaagtgatat--------------------acattttaccttcaacaagatggcgtctgttggaggaatttctttaaacatgtctccac 190  Q
     |  |||||||||||||||||                    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31703124 ccaaaccattccaagtgatatatatttaaatgaatggtgtaacattttaccttcaacaaaatggcgtctgttggaggaatttctttaaacatgtctccac 31703025  T
Q  191 caacatagtttagattctcacttccatgcaag 222  Q
    |||||||||||||||||||||| || ||||||    
T  31703024 caacatagtttagattctcactaccttgcaag 31702993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 31734919 - 31734834
Alignment:
Q  136 tttaccttcaacaagatggcgtctgttggaggaatttctttaaacatgtctccaccaacatagtttagattctcacttccatgcaa 221  Q
    |||||||||||||  || || || ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  31734919 tttaccttcaacagaattgcatcggttggcggaatttctttaaacatgtctccaccaacatagcttagattctcacttccttgcaa 31734834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 31684539 - 31684461
Alignment:
Q  137 ttaccttcaacaagatggcgtctgttggaggaatttctttaaacatgtctccaccaacatagtttagattctcacttcc 215  Q
    ||||||||||||| || ||  ||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||    
T  31684539 ttaccttcaacaaaattgcagctgttggcggaatttctttaaacatgtctccaccaacatagtttaagttttcacttcc 31684461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 31711514 - 31711427
Alignment:
Q  135 ttttaccttcaacaagatggcgtctgttggaggaatttctttaaacatgtctccaccaacatagtttagattctcacttccatgcaag 222  Q
    ||||||||||||||| || || |||| ||| |||||||| |||||||||||||||||||||||  |||| || |||||||| ||||||    
T  31711514 ttttaccttcaacaaaattgcatctgctggtggaatttccttaaacatgtctccaccaacatatcttagcttttcacttccttgcaag 31711427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 3584685 - 3584740
Alignment:
Q  55 taatcaaacctgagaccttaaggaggagcatactccaaggtttcgaggcaacacca 110  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||    
T  3584685 taatcaaacctgagaccttaaggaggagcacactccaaggtctcgatccaacacca 3584740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 31714482 - 31714416
Alignment:
Q  136 tttaccttcaacaagatggcgtctgttggaggaatttctttaaacatgtctccaccaacatagttta 202  Q
    |||||||||||||| || || || | ||||||||||   |||||||| |||||||||||||||||||    
T  31714482 tttaccttcaacaaaatagcatcagctggaggaattctcttaaacatatctccaccaacatagttta 31714416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 5795410 - 5795449
Alignment:
Q  56 aatcaaacctgagaccttaaggaggagcatactccaaggt 95  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  5795410 aatcaaacctgagaccttgaggaggagcatactccaaggt 5795449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 51954192 - 51954155
Alignment:
Q  53 gataatcaaacctgagaccttaaggaggagcatactcc 90  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  51954192 gataatcaaacctgagacctcgaggaggagcatactcc 51954155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 4249252 - 4249216
Alignment:
Q  56 aatcaaacctgagaccttaaggaggagcatactccaa 92  Q
    |||||||||||||||||| |||||||||| |||||||    
T  4249252 aatcaaacctgagaccttgaggaggagcacactccaa 4249216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 19940873 - 19940911
Alignment:
Q  56 aatcaaacctgagaccttaaggaggagcatactccaagg 94  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  19940873 aatcaaacctgagaccttaaggaggagcacactccaagg 19940911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 36428787 - 36428748
Alignment:
Q  56 aatcaaacctgagaccttaaggaggagcatactccaaggt 95  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  36428787 aatcaaacatgagaccttgaggaggagcatactccaaggt 36428748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 20203943 - 20203901
Alignment:
Q  53 gataatcaaacctgagaccttaaggaggagcatactccaaggt 95  Q
    |||||||||||||||||| || || ||||||||||||||||||    
T  20203943 gataatcaaacctgagactttgagaaggagcatactccaaggt 20203901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 4825046 - 4824990
Alignment:
Q  56 aatcaaacctgagaccttaaggaggagcatactccaaggtttcgaggcaacaccatc 112  Q
    |||||||||||||||||| | |||||||| ||||||||||  | || ||||||||||    
T  4825046 aatcaaacctgagaccttgaagaggagcacactccaaggtcccaagccaacaccatc 4824990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 40416391 - 40416431
Alignment:
Q  56 aatcaaacctgagaccttaaggaggagcatactccaaggtt 96  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  40416391 aatcgaacctgagaccttaaggaggagcatactcccaggtt 40416431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 10828731 - 10828773
Alignment:
Q  53 gataatcaaacctgagaccttaaggaggagcatactccaaggt 95  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||    
T  10828731 gataatcgaacctgagaccttaagtaggagcatactcccaggt 10828773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 44069833 - 44069779
Alignment:
Q  56 aatcaaacctgagaccttaaggaggagcatactccaaggtttcgaggcaacacca 110  Q
    |||||||||||||||||| |||||||||| |||||||| | || || ||||||||    
T  44069833 aatcaaacctgagaccttgaggaggagcacactccaagatctcaagccaacacca 44069779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 5579237 - 5579274
Alignment:
Q  58 tcaaacctgagaccttaaggaggagcatactccaaggt 95  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  5579237 tcaaacctgagaccttgaggaggagcacactccaaggt 5579274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 29385744 - 29385780
Alignment:
Q  56 aatcaaacctgagaccttaaggaggagcatactccaa 92  Q
    |||||||||||||||||| |||||||||| |||||||    
T  29385744 aatcaaacctgagaccttgaggaggagcacactccaa 29385780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 31835270 - 31835230
Alignment:
Q  53 gataatcaaacctgagaccttaaggaggagcatactccaag 93  Q
    ||||||| ||||||||||||| |||||||||| ||||||||    
T  31835270 gataatcgaacctgagaccttgaggaggagcacactccaag 31835230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 19963 - 20003
Alignment:
Q  56 aatcaaacctgagaccttaaggaggagcatactccaaggtt 96  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  19963 aatcgaacctgagaccttgaggaggagcatactcccaggtt 20003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 15778 - 15814
Alignment:
Q  56 aatcaaacctgagaccttaaggaggagcatactccaa 92  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  15778 aatcaaacttgagaccttgaggaggagcatactccaa 15814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University